| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5087 |
|---|
| Symbol | |
|---|
| ID | 5673422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 6087548 |
|---|
| End bp | 6088279 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641243938 |
|---|
| Product | lipoprotein signal peptidase |
|---|
| Protein accession | YP_001509352 |
|---|
| Protein GI | 158316844 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0597] Lipoprotein signal peptidase |
|---|
| TIGRFAM ID | [TIGR00077] lipoprotein signal peptidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00915922 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000534801 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAGG GCGTCCCGTA CAGGAACACC CAGTACGGGA GCACCGTGAA CGCCGGTGCG
GCGGGAGTGG GTGCCCCGGG TGCCGCTGAC GCGGGCGGCG GCGCCCCGAG CGGTGACGCC
GCGGTCAGGC CCGACCGTGA CCGCCTGGTC ACCTCGCACC GTGCGGTGCT CGTCGTCGCG
CTGACCGCGC TGTGTCTGAT CGTCCTGGAC ATCGGCACGA AGCTGCTGGC CGTCGCCCAG
CTCACCGGGC GCGCCCCGAT CGAGATCATC CCCGGCGTGC TCGACCTGCG CCTGACCCGG
AACTCGGGGG CCGCGTTCAG CCTGGCCGGC GGGGCCACGG TCATCCTCAG CCTGATCGCG
CTGGCGGTCG TCGCGGTGGT CGTGGTCACC GCCAGGCGGC TGGCCTCCAT CGGGTGGGCG
TTCGTCTTCG GCGCGATGGT CGGCGGCGCG CTGGGTAACC TGATCGACCG GCTGTTCCGC
GCCCCCGGGC CGCTGCGCGG GCACGTCGTG GACTTCGTCC ACATCCACCA CTGGCCCATC
TTCAACGTCG CCGACTCGGC GATCGTCTGC GGCGGAGTGC TCGCGGTCAT CCTCTCCCTG
CGCGGCATCG GCCTCGACGG CACGCGCCTC TCCGCCGCCC CGCCACCCGA CCCCGGGTCA
GCGGAGCCGG CCGGACCATC CGGTCCGGCG GGGCCGAGCC ACGCCGGCGG TCCCGGGCCC
GGTGGCGCGT GA
|
|---|
| Protein sequence | MDKGVPYRNT QYGSTVNAGA AGVGAPGAAD AGGGAPSGDA AVRPDRDRLV TSHRAVLVVA
LTALCLIVLD IGTKLLAVAQ LTGRAPIEII PGVLDLRLTR NSGAAFSLAG GATVILSLIA
LAVVAVVVVT ARRLASIGWA FVFGAMVGGA LGNLIDRLFR APGPLRGHVV DFVHIHHWPI
FNVADSAIVC GGVLAVILSL RGIGLDGTRL SAAPPPDPGS AEPAGPSGPA GPSHAGGPGP
GGA
|
|---|
| |