| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4913 |
|---|
| Symbol | |
|---|
| ID | 5673253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 5899607 |
|---|
| End bp | 5900776 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641243768 |
|---|
| Product | DNA polymerase III subunit epsilon |
|---|
| Protein accession | YP_001509184 |
|---|
| Protein GI | 158316676 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
|---|
| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.157801 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00553803 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGCCGTCG ACGAGCGACT TAAAACAACG GACACACAAT ACCATCCGCG ATCACGGCCG
GATTCGTTGT TTCCCTCGCG TTGCCCTCCA TCCGCACCAG GTTCGCTCCG TCCCCGCACT
GCTCCGGGCA GCGCGGCGCC GGACCGTCGG GGGTCTGCGC CATCATCTGC GGCTGTGAGT
GCTGAGGTTC TTGCCCCGCC CGGCTTCGCC GCACGTTTTC GTCGGCCGTA CGCGGTGGTG
GACGTCGAGA CCACGGGCCT GTCCCCGACG AGGGACAGGG TGCTGTCGGT AGCGGTCGTC
CTGACCGCCG CCGACGGCAC CGTCGAACAC CGCTGGTCAA CCCTCCTGGA TCCCGGATGT
GATCCCGGCC CCGTCCATAT TCACGGTCTG ACCAGGCAGC GCCTGGCCGG GAGCCCGACG
TTCGCCGCCG TCGCCGACGA GGTCGCCGGC CTGCTCGCCG GGCGGGTGCT CGTCGCGCAC
AACGCGGCCT TCGACTGGCG GATGCTAGCC GGCGAGGCCA TGCGGATCGG GACGACGATC
CCGGTCGAGT GGCGGCTGTG CACGCTGACG TTGGCCAGTC GGCTCGGCCT GGAGCTGCCG
AGCCTGCGCC TGGCCTCGCT CGCCGCGTAC TGGGGCGTCG TCCAGCGGCG GGCCCATGAC
GCGCAGGATG ACGCCGAGGT GCTGGCGGCC TTGTTGCCCC GCATCCTGCA ACGTGCCGCC
GACCAGTACC TGGAGCTGCC GCTCACGCGC TGCGGCGTCG ACCACGACGG CGTCACGGTG
CGCCCGCCGC GCTTCGCCGC CGCGGGCCGC ACGCCGCCGT GCCGTTATCG AAACCCCGGG
CGGCTCGATC CCGGTGCGGC GCTGGTCCAG GGAATGCGCG TCGCTTTCAG CGGCCCCACG
CGGACGGAAC GCGGCGAGCT CGTCGGCCGG GCGGTCGCCG CAGGCCTGCA TGTGACGGAA
ACCGTGAGTC GGCGCACAAG TCTTCTGGTG ACCAATGACG CTCGCGGCGT GACCCGGAAG
GTCCGCACCG CCGCGTTGTT GAACACACCC GTACGAGGAG AGGAAGATTT CCTGGAATTG
CTCGCGGCCG TTCGCCCAGG AATTCTCGTC CCGGCTGCCG CACCCGTTCG CCGTGACCGC
CGGCCGCGGC GCCCGACCCC GGACGCGTGA
|
|---|
| Protein sequence | MAVDERLKTT DTQYHPRSRP DSLFPSRCPP SAPGSLRPRT APGSAAPDRR GSAPSSAAVS
AEVLAPPGFA ARFRRPYAVV DVETTGLSPT RDRVLSVAVV LTAADGTVEH RWSTLLDPGC
DPGPVHIHGL TRQRLAGSPT FAAVADEVAG LLAGRVLVAH NAAFDWRMLA GEAMRIGTTI
PVEWRLCTLT LASRLGLELP SLRLASLAAY WGVVQRRAHD AQDDAEVLAA LLPRILQRAA
DQYLELPLTR CGVDHDGVTV RPPRFAAAGR TPPCRYRNPG RLDPGAALVQ GMRVAFSGPT
RTERGELVGR AVAAGLHVTE TVSRRTSLLV TNDARGVTRK VRTAALLNTP VRGEEDFLEL
LAAVRPGILV PAAAPVRRDR RPRRPTPDA
|
|---|
| |