| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4842 |
|---|
| Symbol | |
|---|
| ID | 5673183 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 5806001 |
|---|
| End bp | 5808940 |
|---|
| Gene Length | 2940 bp |
|---|
| Protein Length | 979 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641243698 |
|---|
| Product | SARP family transcriptional regulator |
|---|
| Protein accession | YP_001509114 |
|---|
| Protein GI | 158316606 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3629] DNA-binding transcriptional activator of the SARP family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0556456 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGATTCC ACGTGCTGGG GCCGCTGGAA GTGATCCGGG ACGGCCAGCC CATCGTCGTG
CCCGGCGTCC ATCAGCGTGC CACGCTCGGT TTCCTGCTGT TGCATCCGAA CACGGCGGTG
GCCACCAGCA GGCTGCTCCA GGCCCTGTGG GACCAGGAAC CGCCGGTGAC CGCGCGCAAG
ATGGTGCAGA ACGCGGTGGC GGGCCTTCGC CGGACGCTGG GCGGCGGGGC GGACGTGCTG
ACCCGCCCAC CTGGATACCA GCTGAGCATC CGCGCCGACC AGGTGGACCT GGCCGCCTTC
CAGGAACTGA GCGCGCGTGG CCGGGCGGAG CTGGCCGCCG GTTCGTGGGC TGCCGCTGCC
GCGACCCTGT CGGCCGCGCT CGGCCACTGG CGTGGGCCCG CGCTGGCCGA CCTGGCAGAG
GAGGGCCTGG CCTGGCCGGA GGCCGTCGCC CTGGACAGCG CACGCATGGT CACCTTCGAG
GACTGGGCGG AGGCGCAGCT CGCCCTCGGC CACCACCAGG AGCTCGTGCC CGAACTGGAG
TCGGCCGTCG AGACGACCCC GCTGCGGGAG CGGCTGACCG GGCTGCTGAT GTTGGCGCTC
TACCGCTGCG GCCGGCAGGC GGACGCGCTC GAGCGCTACC GGCGCACCCG GGGCGCTCTC
GTCGACCAGC TCGGTCTCGA TCCCGGGCAC GAGCTGCAGA ACCTGGAACG GGCGATCCTC
GACCACGAGC CCTGGTTGAG CTCACGGCCG ACGGGCGCGC TCACCTCCCG CCACGCCGGG
GTCCTCGCTC CGGGCCGGAT GATCGCGGGC AGCGGCGCTC TCGCGGGGAC TGGCGCTCTC
GCGAGGGCCG GTGCGGTCGC GGGAACCGGT GGCCTGGCGG CCGGCGGTGT GGTCGCGGCG
GCCGGAGTGG CTGGCATGGG CGGCGACGGC GGCGCGGCCG GTGCGCGGCT GCCGGAGGTC
TTCCCGGCCC GGGCTCCCGG CGTGCACGCC GCCCGGAAAT GGGTCAGTGT CCTCGCCGGT
CGACTCGACA TCGGGTCGGG GGCGGAGCTC TCCGATCCGG AGGACGCCGA CCGGGTCCTG
CGGGCCGTCA CCGCCACGGT CCGGGCCGAG ACCGCCCGTT TCGGCGGCGA GGTCCACACG
GCGCTCGGCT CGGTGTGGAT CGCGGTCTTC GGCCTGCCCC GAACCCGGGA GGACGACGCG
GAGCGCGCCG TCCGCGCGGG CCTGGCCATC CGGCGGGCGG TCGCCACATC GGCGAAGGCG
TCCTCGTACG GTGTCGGACA GTACGACCTG CGGATGGCTG TCACTACCGG GGAGGTCCTC
GCAACCCTCA CCCAGGCCAC GCCGGCGGCC GCGGCTTCGG CGGCTGCCGC CGCGATGTCC
GGGGATGTAA CCGGCCGGTG CATGCGCCTG CTGGCGTCTG TGCCCAGGGG TGAGCTGCGG
GTCTGCGAGG CGACCAGGGC GGCGTCCGAC GGGGCCTTCA CCCATGCTTC GACGGACGAG
CACGGCCGAG GCGTCGGCGG CGTGGTGGCG GTGCGCCTGG GCGGCTTGGC GAGTGCGTTC
GGGGCCGGTC CGGCGGGCCG TGAAGGAGCC CTCCACGTGC CATTCCTCGA GCGGGAGCAC
GAGAAGGACC TGATGCACCG GCTGCTCGCC GAGACCGCCC GCCGCCGCCG GCCACGGCTG
GTGACGATCT TCGGTGAGCC CGGCATCGGC AAGAGTCGGC TGCTGTGGGA GTTCTGCCGG
GAGGCCGGCG ACGCGGCTGT CTCGCGCGAC GTCCAGTTCC TGCACGGCCG GATCGGGAGG
TTCCAGAGCG GCCCGTTCGA GGTTCTTACG GACATCACCC GCACGTGGGC GGGGATCGCC
GAGGACGACT CCCGTGAACT GGCGGTGACG AAGCTCGCCG CCGCGGTCGG GATGACGGGC
GCCACCTTCG AAGTCTCGCG CCGCCTGGCG GCCGAGCTGG TTCCGCTGCT GGACCCAGCC
TGGCCGGGCG GCGAGGACGG AGCACGCGTG CTCGCGGCCT GGCGTCGGAC ACTTGGGAGG
ATCGCGGCCG TGGCCCCGAC GGTGCTCGTC GTCGAGGACC TGCACCGGGG AGACGACCGG
CTGCTCGACT GTCTGGAGGT GCTCGACGAG CAGCTGGGCC GCGTTCCGCT GCTTGTCGTC
GCCAGCACCC GGCCGGACCT GCTCGAACGG CGGCCGTGCT GGGCCGGCGG CAAGCGTGAC
GCGACGACGA TGTCCCTCGA CCAGCTCTCC GCCGCCGCCA TCCAGCATCT GATGGTCGAT
CTGGCGGTGT TGTACGGGCT GCGCCCCGCG TCGTCGGCGC CGCCGCTCGC GGGCGCGGGC
GGCGGCGGGC CCGCGCCCGA GACCGCGGCC CACGAGTGCG GGACGGTCGC CAAGGTCGGC
GGCAATCCGC TGTTCGCGGT CGCCCTCGTC GAGATGCTCC GCGCGGCACG GGCCGCCAAG
GGTGACGGCG TCTCCCCGGC TCTGCTGATC GACAGTGCGG GCCCGATCGG CCCGGGCTCC
GCGATGGTGT CGATCCCGCG CACGGTTCAC GGCGTGATCG CGGCGTGGCT GGACACTCTG
CCGTCACGCA GCCGTCTGGT GCTGCAGGGC GCGGCGGTGT TCGGCGCGAC CGTCTGGGCC
GCGCCGGTCG CGGCCGAGTG CGAGCTGACC CGCGAAGACG TCCTACGGGA GCTGGAGTAC
CTCGAACGCC GGGGCGTGCT GCGGCAGATG CCGACCGTTG CCGACCCCGA CCCGCACTAC
GAGTTCCGGC ATGCCTTCGT CCGGGACGTC GCCTACTCGC AGATCCCGCG TGCCGTCCGG
GGAGGGTGGC ACCTGTGCTT CGCCCGCTGG TTGGGTGACG AGTACGGGCG GGTCGCACAG
GACGATCTCC GCCGGCACCA CCATCGGCGC GCCGACAGCC TCACCGCCGC GGCCGGCTAG
|
|---|
| Protein sequence | MRFHVLGPLE VIRDGQPIVV PGVHQRATLG FLLLHPNTAV ATSRLLQALW DQEPPVTARK
MVQNAVAGLR RTLGGGADVL TRPPGYQLSI RADQVDLAAF QELSARGRAE LAAGSWAAAA
ATLSAALGHW RGPALADLAE EGLAWPEAVA LDSARMVTFE DWAEAQLALG HHQELVPELE
SAVETTPLRE RLTGLLMLAL YRCGRQADAL ERYRRTRGAL VDQLGLDPGH ELQNLERAIL
DHEPWLSSRP TGALTSRHAG VLAPGRMIAG SGALAGTGAL ARAGAVAGTG GLAAGGVVAA
AGVAGMGGDG GAAGARLPEV FPARAPGVHA ARKWVSVLAG RLDIGSGAEL SDPEDADRVL
RAVTATVRAE TARFGGEVHT ALGSVWIAVF GLPRTREDDA ERAVRAGLAI RRAVATSAKA
SSYGVGQYDL RMAVTTGEVL ATLTQATPAA AASAAAAAMS GDVTGRCMRL LASVPRGELR
VCEATRAASD GAFTHASTDE HGRGVGGVVA VRLGGLASAF GAGPAGREGA LHVPFLEREH
EKDLMHRLLA ETARRRRPRL VTIFGEPGIG KSRLLWEFCR EAGDAAVSRD VQFLHGRIGR
FQSGPFEVLT DITRTWAGIA EDDSRELAVT KLAAAVGMTG ATFEVSRRLA AELVPLLDPA
WPGGEDGARV LAAWRRTLGR IAAVAPTVLV VEDLHRGDDR LLDCLEVLDE QLGRVPLLVV
ASTRPDLLER RPCWAGGKRD ATTMSLDQLS AAAIQHLMVD LAVLYGLRPA SSAPPLAGAG
GGGPAPETAA HECGTVAKVG GNPLFAVALV EMLRAARAAK GDGVSPALLI DSAGPIGPGS
AMVSIPRTVH GVIAAWLDTL PSRSRLVLQG AAVFGATVWA APVAAECELT REDVLRELEY
LERRGVLRQM PTVADPDPHY EFRHAFVRDV AYSQIPRAVR GGWHLCFARW LGDEYGRVAQ
DDLRRHHHRR ADSLTAAAG
|
|---|
| |