Gene Franean1_4554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_4554 
Symbol 
ID5672901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp5433062 
End bp5433718 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content71% 
IMG OID641243417 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001508833 
Protein GI158316325 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGATCTTC ATCTGAACGG TAAGGCCGCA CTCGTCACCG GAGGCTCGCG CGGCATCGGG 
CACGCGATCG CCGCCCGCCT GTCGACCGAA GGCTGCCGGG TAGGGATCTG CGGACGCGAT
CCCGACACGC TCGCGGAAGC GACAGCGGGC CTCGGACGCG CCGAGTCCGA CGTCGTCGGC
GTCATCGCCG ACGTGACCAG ACCGGGCGAG GTCGAACGCT TCGTCGAAGC CGCCGCCGCG
GCCCTCGGTG GCGTCGACCT GCTGGTCGCG AACGTCGGCG GCGGCGCGGT CGTCATCGTC
TCGTCGATCT CCGCGTCGAA GCCGTCGCCA CGGGCGCAGT ACGGGGCGGC CAAAGCCGCG
GAGAACTACC TGGCCTCGAC CTTCGCCCGA GAACTGGGCC CGCTCAACAT CCGCGTCAAC
GCCGTGAGCC CGGGATCCGT CCTCTTCCCC GACGGCGGGT GGGAGCGGTA CTCCCGGCGC
CACCCGAACG AGTTCGACGA GTTCGTCCAG CGAGACTTCC CCGCCCGCCG ACTGGGCACC
GTCGACGAGG TCGCGGACGT GGTCACCTTC CTGCCCTCAG AGCGCGCCAG CTGGGTGAAC
GGAGCCACCA TCGCCGTAGA CGGCGCTCAG GGCCGACCAA GCGCCAACGG GTACTGA
 
Protein sequence
MDLHLNGKAA LVTGGSRGIG HAIAARLSTE GCRVGICGRD PDTLAEATAG LGRAESDVVG 
VIADVTRPGE VERFVEAAAA ALGGVDLLVA NVGGGAVVIV SSISASKPSP RAQYGAAKAA
ENYLASTFAR ELGPLNIRVN AVSPGSVLFP DGGWERYSRR HPNEFDEFVQ RDFPARRLGT
VDEVADVVTF LPSERASWVN GATIAVDGAQ GRPSANGY