| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4336 |
|---|
| Symbol | |
|---|
| ID | 5672691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 5179553 |
|---|
| End bp | 5180359 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641243209 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001508626 |
|---|
| Protein GI | 158316118 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGGGACG CCGACGCCGA CGCCCACGCA ACCGGCCCCG GCCCCGGCCG GGCCGATTCC
GCGCGACGCG ACGCCCACGG AACGGTCGCG CCGGTGGTGC CCCGCATCGA CCTGTGTGGC
GTCGGCAAGC ACTACGGTGG CGGCGAGGCC GGGGTGACCG CGCTCGAGGA CGTCGACCTG
CGGGTCGAGG GCAGCGCGTT CGTGGTCGTC CTCGGGCCGT CCGGGTGCGG CAAGACGACC
CTGCTGAACC TGGTGGGGGC GCTGGACATC CCGACCGCGG GGACCGTCCG ACTCGGCGGG
GCCGATCTCA CCCGGTCCTC GCAGCGGGAG CGGCGGGAGA TCCGGCGGCA CACGGTCAGT
TTCGTGTTCC AGTCGTTCAA CCTGTTCCCG GCGCTCACCG CCCGGGAGAA CGTGCGGTTC
GGGGCCGACG TCGCGGGCCG GCCGCGGGCC CGGGAGGTCA CCGAGGAGGT CCTCGACGGC
GTCGGGCTGG CGCCCCGCGG CGACCACTTC CCCCACCAGC TCTCCGGCGG GGAGCAGCAG
CGGGTGGCGA TCGCCCGCGC GCTCGCCACC GGCAACCCGA TCCTGCTCGC GGACGAGCCG
ACCGGCGAGC TCGACTTCCA CACCGGGGTC CAGATCCTCG TCCTGCTGGA GGCGCAGACG
GCCGCCGGCC GCACCGTCGT GGTCGTCACC CACAACCGGG AGATCGCCCG CATCGCGGAC
CGCGTGGTCG AGCTGTCCAG CGGACGGATC GTCGCCGACG GCCCGCCGCC CGGCGGCCGT
GTGCCCGTCG GTGACCTGCG ATGGTGA
|
|---|
| Protein sequence | MRDADADAHA TGPGPGRADS ARRDAHGTVA PVVPRIDLCG VGKHYGGGEA GVTALEDVDL
RVEGSAFVVV LGPSGCGKTT LLNLVGALDI PTAGTVRLGG ADLTRSSQRE RREIRRHTVS
FVFQSFNLFP ALTARENVRF GADVAGRPRA REVTEEVLDG VGLAPRGDHF PHQLSGGEQQ
RVAIARALAT GNPILLADEP TGELDFHTGV QILVLLEAQT AAGRTVVVVT HNREIARIAD
RVVELSSGRI VADGPPPGGR VPVGDLRW
|
|---|
| |