| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4288 |
|---|
| Symbol | |
|---|
| ID | 5672643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 5126550 |
|---|
| End bp | 5126933 |
|---|
| Gene Length | 384 bp |
|---|
| Protein Length | 127 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641243161 |
|---|
| Product | carboxymuconolactone decarboxylase |
|---|
| Protein accession | YP_001508578 |
|---|
| Protein GI | 158316070 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.285381 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAGA CCGAGCAGCT ACGCGCCGCC TACGCCATGC GCCGAGCCAT GCTGGGCGAC
GCCTACGTCG ACCGCGCGAC CGGCGACACC GACGAGACCA GCCAGCAGTT CCAGGACCAC
ATCACGTCGA TGGCGTGGGG CGTCTGGACC AGGGAGGGCG TGCTGTCCAC CCGGGACCGC
AGCCTGCTGG TCATGGCGAT GACCGCGGCG CTGGGCCGGA TGGAGGAGTT CCGCCTGCAC
GCGAGCTCGT CGTCGCGCAC CGGGGTCAGC GACGCGGAGA TCGACGAGCT GCTGTTCCAG
GTGGCGGCGT ACTGCGGCGC GCCGGCCGCG ATCTCGGCCC GGCGGGCGGT CAAGGCCGTG
CGGGCGGAAC GCGACGACGC ATGA
|
|---|
| Protein sequence | MEQTEQLRAA YAMRRAMLGD AYVDRATGDT DETSQQFQDH ITSMAWGVWT REGVLSTRDR
SLLVMAMTAA LGRMEEFRLH ASSSSRTGVS DAEIDELLFQ VAAYCGAPAA ISARRAVKAV
RAERDDA
|
|---|
| |