| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3911 |
|---|
| Symbol | |
|---|
| ID | 5672272 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 4676888 |
|---|
| End bp | 4677661 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641242790 |
|---|
| Product | xylose isomerase domain-containing protein |
|---|
| Protein accession | YP_001508207 |
|---|
| Protein GI | 158315699 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0998183 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATCGG AACCGAGAGT CGAGCTGGCG CTGACGCCCG ACTCGCGCTG GGACGTCGAC
ACAGCCGGCC TCGTGGCGGC GGCCGCGGGC GCCGGGTTCG GGTCGGTCGG GCTCGCCGAG
GCCAACGCCG ACGCGGCCGG AGCGGCCGTC CTCGCCGCGG CGGGCCTGCG CTGCCACGAG
ATCCTGGCCC TGATCGTGAC CGACGACGAG CAGGCCACGA TCGACCAGGC TCGCCGGGTC
GCGAAGGCCG CGGCCGCGGT GAACGCCCGG TGGGTCCTGA CCGGCTTCCG GGTGGGGCTC
GACGAGCGGA GCGGCCCGTT GATCGCCCGG TGCGCCGCGC TGTTCGCCGC CGCCGGTGCC
GGGATGGCGG TGGAGTTCAG CCCGCTGGGC GGCACGAAGT CGATCGCCAC CGCCGTGGAC
ATCGTGGAGG CCGCCGGCCC CGACCGCGCG GGCGTGCTGA TCGACACGTG GCATTTCTTC
AACGGGGAGA GCACCTGGGA GCAGCTCGAG CAGGTGCCCC TGGACCGCAT CGCCTACGTC
CAGTTCGACG ACGCGCTCCC GCCGATCTCC CCGAACGGGA TCAAGGAGAC GATGCACCGC
CGCGCCATGC CCGGCGAGGG GATCTTCGAC CTCGGACGGT TCGCCGCCAC CCTGCTCGAC
CGGGGCTGGT CGGGCCTGGT CAGCGTCGAG GTACTCAACG CCGAGCTGCG TGAGCTGCCC
GTCCCCGAGT TCGCCCGCCG CGCCTACGAG ACGACCGCCG GGTTCTGGCG ATGA
|
|---|
| Protein sequence | MTSEPRVELA LTPDSRWDVD TAGLVAAAAG AGFGSVGLAE ANADAAGAAV LAAAGLRCHE
ILALIVTDDE QATIDQARRV AKAAAAVNAR WVLTGFRVGL DERSGPLIAR CAALFAAAGA
GMAVEFSPLG GTKSIATAVD IVEAAGPDRA GVLIDTWHFF NGESTWEQLE QVPLDRIAYV
QFDDALPPIS PNGIKETMHR RAMPGEGIFD LGRFAATLLD RGWSGLVSVE VLNAELRELP
VPEFARRAYE TTAGFWR
|
|---|
| |