| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3867 |
|---|
| Symbol | |
|---|
| ID | 5672230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 4596737 |
|---|
| End bp | 4598851 |
|---|
| Gene Length | 2115 bp |
|---|
| Protein Length | 704 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641242745 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_001508165 |
|---|
| Protein GI | 158315657 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components
[COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.318133 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAGC TGTTCACTTT CGGGATTGTG GGGCTGAGCA CCGCCGCGAT TTACGCCATC
ATCGGCAGCG GTCTGGTGCT CACCTACACC ACCACCGGCG TGTTCAACTT CGCGCACGGT
GCCGCGGGCA TGATGGCCGC GTTCGTGTAC TGGCAGCTCA CCGAGGGCTG GGGGCTGCCG
GTACCGATCG CGCTGGTCCT GGTACTGGCC GTGCTCGCGC CCGGTTTCGG CCTGCTGGTC
GAACGGGTGG TGCTCCGGCC GGTCCAGGGC CTGGGCGAGG CCGAACGCCT GGTGATGACG
GTCGCGATGC TGAGCGGTCT CATCGCGGTC GCCCGGTGGA TCTGGGACCC GAACGAGGCG
CGGTCGCTGC CGACCTTCTT CGCTGACCGC GCCGCGATCG ACATCGGGCC CGCCACGATC
ACCTGGCACC AGGCCCTGAC GATGATCGTC GCGGTGGCGG TCGCGATCGG CCTGCGCGTT
CTGCTCTACG GGACGCGCAT CGGCGCCGAG ATGCGGGCGA GTGTCGACGA CCGGGCGCTG
GTGGGTCTCA CCGGCGCCAA CCCGGTTCGC TCGAACCAGG TCGCCTGGAT CCTCGGCACC
CAGCTGGCGG CGATCGGCGG CATCCTCATC GCGCCGTCGG TCTCGCTGGA CGCCGGCCAG
CTCTCGCTGC TGATCGTCAG CGCCTACACG GCTGCCATCT TCGGACGGCT GCGCAGCCTG
CCGTTGACCT TCCTCGGCGC GGTCGTCGTC GGGTGCCTGG AGAGCTATCT GACCGGGTAC
CTCCCGAGCA ACGACTACCT GCCGGGGCTG CGGCTCGCGG CGCCCGCGCT GCTGCTGTTC
CTGGCGCTGC TGGTGTTCCC CCACCGGCGG CTGCGCGGCC GGGACACGAA GGCACGCCCG
GTCGCGGTCC CGTCGGTGCG GGGGACCCTC GTGTTCGCCG GGGCGATCGT GGTGTTCGGG
ATCGTGCTGG CCTCGGTACT GGGCGAGGGC GACCTGATCA CCTACGGGCA GATCTTCTCG
TTCGGTGTGA TCGCGCTGTC CTACGTCCCG CTCGCGGGTT ACGCCGGGCA GATCTCGCTG
TGCCAGCTCA GCATGGCCGG CATCGGCGCC GCGGTCTGGG CGCACATGGG TGCCGACGGC
GGGATCTGGG CGCTCGCGGC CACCGTGGTG ATCTCGGGGG CGGCCGGTGC GCTGGTCGCG
CTACCGGCAC TGCGGCTCTC CGGCGTGTAC CTGGCGCTGG GTACGGCGGC CTTCGCGGTC
ATCCTCGACC GGTGGATCTT CACCCTTCCC GCGTTCGACC TGTTCGGGGC GAAGATCTCG
CTGTACGACG GGGGAACGGT CGACGTGTCC GGGCCGTCGC TGTTCGGCTG GCATCTGGAC
AGTGGCTCCG AGCTGATGGT GTTCTCCGCG GTCTGGCTCG CGCTCACCAC CCTGGCGGTG
GCGTGGCTGC GCCGTGGCAG GTTCGGCCGT CAGCTCATCG CGCTGCGGGA CAGCGAGGCG
GCCTACGCCA CCCTCGGTGG CAACCTGCTG CGGTCCAAGG TGGCGGTCTT CGCGATGTCC
GCGGGTATCG CGGGCCTCGG CGGGGCGCTG TACGGCATGC AGCAGCGGTC GGTAACCGCC
GAGCAGTTCG GTCTCGTCGC CGGCCTGCCG CTGTTCCTGA TCGCCGTGAT CGGCGGCCTC
ACCTCGGTGG GCAACGGCCT GTTCTCGGGG GCCGCGCTGG GCGGATCGTT CCCGGTGATC
TCCGCAGCGG GGACGTTCGC GCAGAACATC ACCTCGGTGC TGCCCGGCCT CGCCGGGCTC
GGGCTCGCGC GGAACCCCGA CGGCGCCGTC CCCGAGATGC GCGCCGGCGC CGAGCCGCTC
GGCCGGAACA AGCCCGTCCT GGCCGGGCTC ATCGGCGCGC TCGTCGTGCT CTGGGTTCTC
CAGCTCGGCG ACGTGCTCGA CGGCTGGCTG ACCTTCAGCC TGGCGCTGGT CCTGATCGTC
GCGGCCCAGA CCTACGCGCA GGTCCGGGAG GCGAAGCCCG TCGAGTCGGA CGTCCCCGTC
GAATGGTGGG GCGTGCGTCG GGCCTGGCGT CGCGAGGACG AGGAGGTGCT GGCCCGTGGC
ATTGCTGGAG GTTAA
|
|---|
| Protein sequence | MEQLFTFGIV GLSTAAIYAI IGSGLVLTYT TTGVFNFAHG AAGMMAAFVY WQLTEGWGLP
VPIALVLVLA VLAPGFGLLV ERVVLRPVQG LGEAERLVMT VAMLSGLIAV ARWIWDPNEA
RSLPTFFADR AAIDIGPATI TWHQALTMIV AVAVAIGLRV LLYGTRIGAE MRASVDDRAL
VGLTGANPVR SNQVAWILGT QLAAIGGILI APSVSLDAGQ LSLLIVSAYT AAIFGRLRSL
PLTFLGAVVV GCLESYLTGY LPSNDYLPGL RLAAPALLLF LALLVFPHRR LRGRDTKARP
VAVPSVRGTL VFAGAIVVFG IVLASVLGEG DLITYGQIFS FGVIALSYVP LAGYAGQISL
CQLSMAGIGA AVWAHMGADG GIWALAATVV ISGAAGALVA LPALRLSGVY LALGTAAFAV
ILDRWIFTLP AFDLFGAKIS LYDGGTVDVS GPSLFGWHLD SGSELMVFSA VWLALTTLAV
AWLRRGRFGR QLIALRDSEA AYATLGGNLL RSKVAVFAMS AGIAGLGGAL YGMQQRSVTA
EQFGLVAGLP LFLIAVIGGL TSVGNGLFSG AALGGSFPVI SAAGTFAQNI TSVLPGLAGL
GLARNPDGAV PEMRAGAEPL GRNKPVLAGL IGALVVLWVL QLGDVLDGWL TFSLALVLIV
AAQTYAQVRE AKPVESDVPV EWWGVRRAWR REDEEVLARG IAGG
|
|---|
| |