| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3687 |
|---|
| Symbol | |
|---|
| ID | 5672053 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 4364147 |
|---|
| End bp | 4365007 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641242570 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001507990 |
|---|
| Protein GI | 158315482 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTTAC TTTCGGGCCG GGTCGCCGTC GTCACCGGCG CCAGCCGGGG CATCGGGAAG
GGCATCGCGC TCGCGCTCGC CGACGAGGGC GCGACGGTCT ACGTCACCGG GCGGACGGTG
TCCCCCGGCT CGCATCCGCT TCCCGGCACG GTCGGTGAGA CCGCGGCGGC GGTGGACCGC
CGGGGCGGTC AGGGCATCGC CGTCCAGGTC GACCACGGTG ACGACGAGCA GGTCGCCGCA
CTGTTCGAGC AGGTCGAGCG GGAGCAGGGC CGGCTGGACA TCCTGGTCAA CAACGCCTTC
TCCCTGCCCG AGGACCTGAC GGAGCCGAAC CCGTTCTGGG AGAAGCCGCT GTCGAACTGG
GAGATGGTCG ACGTCGGGGT GCGGTCGAAC TTCGTCGCCG CCTGGCACGC GGCGCGGCTC
ATGGTTCCGC GCCGGGCCGG CCTCATCGTG GCGATCTCCG GCTACGTGGG AGTGACCTAC
ACCTACGGCG TCGTCTTCGG CACCTGCAAG TCCGCGGTCG ACCGCATGGC CAGGGACATG
GCCATCGAGC TCAAGCCGCA CAACATCGCG TCGATCTCGC TGTGGCAGGG CCTCACCTTC
ACCGAGCGGG CCGAGCGCAA CATCTCGCTG AACCCCGCGA TGAAGGAGCA GCTCGTCACC
AGCCCGACGA TCGGCTGCTC GCCGGAGTTC CCCGGCCGCG TCATCGCGGC GCTCGTCCAG
GACACGGACC TGATGCGGCA CTCCGGGGGC ACCTTCATCA CCGCCGAGCT GGCCCAGGAG
TACGGCGTCA CCGACCTCGA CGGGAAGGTC ATCCCGTCCC TGCGGGCCCA GCGCGGCGCC
CCCCTCTGGT CCCCCGTCTA G
|
|---|
| Protein sequence | MGLLSGRVAV VTGASRGIGK GIALALADEG ATVYVTGRTV SPGSHPLPGT VGETAAAVDR
RGGQGIAVQV DHGDDEQVAA LFEQVEREQG RLDILVNNAF SLPEDLTEPN PFWEKPLSNW
EMVDVGVRSN FVAAWHAARL MVPRRAGLIV AISGYVGVTY TYGVVFGTCK SAVDRMARDM
AIELKPHNIA SISLWQGLTF TERAERNISL NPAMKEQLVT SPTIGCSPEF PGRVIAALVQ
DTDLMRHSGG TFITAELAQE YGVTDLDGKV IPSLRAQRGA PLWSPV
|
|---|
| |