| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3608 |
|---|
| Symbol | |
|---|
| ID | 5671976 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 4272992 |
|---|
| End bp | 4273471 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641242493 |
|---|
| Product | cupin 2 domain-containing protein |
|---|
| Protein accession | YP_001507913 |
|---|
| Protein GI | 158315405 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0662] Mannose-6-phosphate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.13649 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGCCCGT TCCACGCCAC CTCCGGCACC GCCCGGGGCG GACCGCGGAC GGTCCTCCCG
GGCAGACCGG CGCCCGTCCC GCTCGCCACC GCGGCGACGA CCAGCGGCTC CTACGGGCTG
CTCCGGATCC AGCTGCTGCC CGGCGACGAA GCACCGTACC TCGTACACCA TGGTGAGGAT
CGGTCGTTCG TCGTCCTCGA CGGCCGGATG CGGGTCGACA CCGCTTCACG CCGCTTCACC
GCCGCCACCG GAGACCTCGT CTTCGTCCCC CGCGACCGGC CGCACCGATG CCTCGCCCTG
GACGGGCCGG CCGACGTGCT CATGCTGTTC ACGCCGGGTG GGGCCGAAGG GCTCTACCTC
GCGCTCTGGC CGCCGGGGGA CGACGCCGAC CTCATCGTGC GGCTATCGGC CGAGTACAAC
GTCGACGTGC TCGCCCTGTC TGCCGAGGCG CCGGACGAAT CGAACCATCA CGACGGTTGA
|
|---|
| Protein sequence | MGPFHATSGT ARGGPRTVLP GRPAPVPLAT AATTSGSYGL LRIQLLPGDE APYLVHHGED
RSFVVLDGRM RVDTASRRFT AATGDLVFVP RDRPHRCLAL DGPADVLMLF TPGGAEGLYL
ALWPPGDDAD LIVRLSAEYN VDVLALSAEA PDESNHHDG
|
|---|
| |