| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3259 |
|---|
| Symbol | |
|---|
| ID | 5671633 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 3859595 |
|---|
| End bp | 3860647 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641242151 |
|---|
| Product | luciferase family protein |
|---|
| Protein accession | YP_001507571 |
|---|
| Protein GI | 158315063 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2141] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR03560] probable F420-dependent oxidoreductase, Rv1855c family
[TIGR03621] probable F420-dependent oxidoreductase, MSMEG_2516 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCTC CTGCTCCGGC CAGACCGCTC CACAACCACG GCGGGGCCCC AGTCCGCGGA
ATCCGACTGA AGATCCAGGT GGTCACGATG AACCAGAAGC CGTTCCGCTT CGCTGTACAG
GGCACGCGCG CCACCTCGGG CCGCGAGTGG TACGACCTGG CCCGCAAGGC TGAGGCCCTC
GGGTACTCGA CGCTCTTCGT CGCGGACCAC TACCTCGGGC CGGGCCCCGC GGCCCGGGCC
TGCAGCATGC CGCCGCAGCA CCTGGCGCCG GTCTCGGCGA TGGTCGCCGC CGCCGCGGTC
ACCTCGACCC TGCGGGTCGG CTGCCGGGTC TTCTGCATCG ACTACCACGT GCCCGCGGCC
CTGGCGAAGG AGGCCGCGAC CATCGATCTG CTCTCCGAGG GCCGGCTCGA GATGGGTATC
GGCGCCGGAG TACAGGTCAA CGAGTACAAG GCCCTCGGCA TCCCCTTCCT GCCCGGCAAG
GAGCGGGTCG ACAAGCTTGA GGAGGTGATC GCCCTGTTCA GGGCGCACTG GTCCGGTGAG
CCGATCGACC TCAGCGGCGA GCACGTCGAT GTCCACGGCT ACCGGGGGCT GCCGCGGCCC
GCCCAGAAGC CGCACATCCC GCTGATGATC GGCGGGAATC GGAAGCGCAT GCTCTCGCTG
GCGGCCAGGG AGGCCGACAT CGTCAGTATC GGCAACGTGC CCTTCGACCC GCTGAACGCC
TCCGGCCTCA CCCCCAGGCA GGAGGCGGTG CACCGGTACG AGGTGGTGCG TGCTGCCGCC
GGCGAGCGCC TGGACGAGAT CGAGATCGAA GGATCGCCCT ACTTCACCAT TCTGACGGAG
GACCGCGATT CGGCGTACAA CGAGATCGCC AGCTGGATCT CGGTCGACGC GTCGGTGCTC
CCCGAGCACC CCAACGTTCT GGTCGGCACG CTCGACGAGA TGGAGCAGCG GCTGCGCGCC
AACCGGGAGG AGCTCGGCAC GAACTATGTG ACCGTTCCCC AGAACGCCAT CGACACGTTC
GCGCCTCTGG CCGAGCGGCT GCGGGGGAAA TGA
|
|---|
| Protein sequence | MAAPAPARPL HNHGGAPVRG IRLKIQVVTM NQKPFRFAVQ GTRATSGREW YDLARKAEAL
GYSTLFVADH YLGPGPAARA CSMPPQHLAP VSAMVAAAAV TSTLRVGCRV FCIDYHVPAA
LAKEAATIDL LSEGRLEMGI GAGVQVNEYK ALGIPFLPGK ERVDKLEEVI ALFRAHWSGE
PIDLSGEHVD VHGYRGLPRP AQKPHIPLMI GGNRKRMLSL AAREADIVSI GNVPFDPLNA
SGLTPRQEAV HRYEVVRAAA GERLDEIEIE GSPYFTILTE DRDSAYNEIA SWISVDASVL
PEHPNVLVGT LDEMEQRLRA NREELGTNYV TVPQNAIDTF APLAERLRGK
|
|---|
| |