| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3250 |
|---|
| Symbol | |
|---|
| ID | 5671624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 3844278 |
|---|
| End bp | 3846044 |
|---|
| Gene Length | 1767 bp |
|---|
| Protein Length | 588 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641242142 |
|---|
| Product | glycoside hydrolase family 3 protein |
|---|
| Protein accession | YP_001507562 |
|---|
| Protein GI | 158315054 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTCCC CCTCGGTCCC CGCCTCGGGT TCGGGAATCC CGGAGGTCAG CCTCCCCTAT
CAGGACACGA CTCTTAGCAC CGACCGGCGC GTGGCGGACC TCCTCTCCCG CCTGGACCTG
GAAGCCAAAG CCGGCCTCCT GTTCCATCCC CTCGCGATGC TCGGCGGACT CGACGATCCC
GGCATGTTCG GCATGCCCTC GATGCGGTCC ATGCTGCACA AGCGCATCAA CCACTTCAAC
ATCGCCCTGG TGCCCTCTGC GCGGGAACTC GCGCAGTGGC ACAACAAGCT CCAGGAAGAA
GCACTCGGCA CGCCGCTGGG CATACCGGTG ACAATCTCCA GCGATCCGCG GCACTCCTTC
ACCGACAACC CGGCGACCGC GCTTCTGGCC GGGCCGTTCT CCCAGTGGCC CGAACCGCTC
GGATTCGCCG CGATCGGCTC GACCGAGCTG GTGGGGCGCT TCGCGGACAC CGTACGCCGG
GAGTACCTCG CCACGGGCAT CCGCGTCGCC CTGCACCCGC AGATCGACCT CGCCACCGAG
CCACGCTGGT CCCGGATCTC CGGCACGTTC GGGGAGGACG CCGATCTGGC CTCCCGGCTC
GCTCCCGCCT ACGTGCGCGG CCTGCGGGCT GACGCCCTGG GGCCGGAGTC CGTCGCGGCC
ATGGCCAAGC ACTTCCCGGG CGGCGGCCCG CAGAAGGACG GCGAGGACCC CCATTTCGCC
TACGGCCGGG AGCAGGTCTA CCCCGGGGGC CGGTTCGAGC TGCACCTCGA ACCGTTCCGA
GCGGTCATCG ACGCGGGCGT GTCGCAGATG ATGCCGTACT ACGGCCTGCC CGTCGGCCTC
GAGTTGGAGG AGGTGGGCTT CGCCTTCAAC AAGGCTGTCG TCACCGGAAT CCTGCGTGAG
CAGCTCGGCT TCGACGGCAT CGTGTGCACC GACTGGGGCG TCCTGACCCA GATGTCCTGG
GGCGTGGAAC ACCTCACCTT CGAGGAGCGC ATGCTGAAGG CCCTCGACGC GGGCGTGGAC
CAGTTCGGCG GTGAGCTGCG CCCCGACGTC CTGGTCTCCC TCGTGCGGAA CGGCTCGGTC
AGCGAGAGTC GTCTCGACGT CTCCGCCCGA CGGATGCTGC GCGAGAAGTT CCACCTCGGC
CTTTTCGACC ATCCGTTCGT CGACGTCGAG CGGGCGACCG TGCTGGTCGG TTCGGAGACC
GCCCGTGTAG CCGGCCTCGC CGCGCAGCAG GCCGCATACA CACTGCTCAA GAACGAGGCG
GACTCGCCCG CGCGGCTACC GCTGCGGCGC GGCCTGCGCG TCTACGCGGA AGGTCTCGCA
CCGGCGGCAC TGGCGGACCG CGCGGCGGTC GTCGCCACGC CGCAGGAGGC CGACGTGGCC
GTGATCAGGC TGTCGGCTCC CTTCGAGAAG CGCGGCGCGG AGGGCGAGTA CGAATCCTTC
TTCCACGCCG GATCCCTCGC CTTCCCCGCC GAGGAGGAGC GGCGCGTCCG GGAGATCTGC
GAAACCCTTC CGACCGTGCT CGACGTCTAC CTCGACCGCC CCGCCATCAT CGGCGGGCTC
GCCGCGGCCG CCGCCGCCGT CACGGTCAAC TTCGGCGCTT CGGAGCAGGC CTGCGCCGCG
GTCCTCTTCG GGGACGCGCA GCCGCAGGGA AACCTCCCCT TCGACATCCC CTCCTCCATG
GCCGCCGTGG AGAACAGCCG GTCCGACACG CCCTTCGACA CCACCGATCC GGCCTTTCGC
TTCGGATCCG GCCTCCGATA CGCATGA
|
|---|
| Protein sequence | MPSPSVPASG SGIPEVSLPY QDTTLSTDRR VADLLSRLDL EAKAGLLFHP LAMLGGLDDP
GMFGMPSMRS MLHKRINHFN IALVPSAREL AQWHNKLQEE ALGTPLGIPV TISSDPRHSF
TDNPATALLA GPFSQWPEPL GFAAIGSTEL VGRFADTVRR EYLATGIRVA LHPQIDLATE
PRWSRISGTF GEDADLASRL APAYVRGLRA DALGPESVAA MAKHFPGGGP QKDGEDPHFA
YGREQVYPGG RFELHLEPFR AVIDAGVSQM MPYYGLPVGL ELEEVGFAFN KAVVTGILRE
QLGFDGIVCT DWGVLTQMSW GVEHLTFEER MLKALDAGVD QFGGELRPDV LVSLVRNGSV
SESRLDVSAR RMLREKFHLG LFDHPFVDVE RATVLVGSET ARVAGLAAQQ AAYTLLKNEA
DSPARLPLRR GLRVYAEGLA PAALADRAAV VATPQEADVA VIRLSAPFEK RGAEGEYESF
FHAGSLAFPA EEERRVREIC ETLPTVLDVY LDRPAIIGGL AAAAAAVTVN FGASEQACAA
VLFGDAQPQG NLPFDIPSSM AAVENSRSDT PFDTTDPAFR FGSGLRYA
|
|---|
| |