Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_3226 |
Symbol | |
ID | 5671601 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 3810580 |
End bp | 3813069 |
Gene Length | 2490 bp |
Protein Length | 829 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641242119 |
Product | glycoside hydrolase family protein |
Protein accession | YP_001507539 |
Protein GI | 158315031 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCCGTG TGTCGTTCAA CCGGGGCTGG ACCGTGCGTC CGCGGACCAG CCTCTTCGGC GAGGTGAGCG GAAATGCGCC TGCTGCTGCC GGAGTGACGT TGCCGCACGA TGCGATGATC GTCCTTGACC GCTCCGCGGA GCACAGCGGG GGAGCCGAGA CGGGTTACTT TCCTGACGGT GTCGTCGAAT ATGTGAAATC GTTCGAGGTG CCCGAATCGT ACCGGGACAA GCGAGTGATT CTCGAGTTCG AAGGGGTGTA CCGGGACGCG CAGGTGTATG TCAACGGCGC CTTCGCGGGA CAAAGGCCAT ATGGATACTC GCTGTTCCGT GTGAGTCTTG ATCCTTTCCT GCGTCATGGG CAGGCCAACG AAGTGCGGGT CGAGGCGCGC GCTCACAGCG ATTCGCGTTG GTACAGCGGC CTCGGCATAC ACCGCCCCGT GAGTCTCATC GTGAACGAAC CGGTGCACAT TGCGGCCGAT GGGGTGCGAA TCACGACGCC AGACGTAGAC GACGAACGGG CGGTCGTCGC GGTCGCGACC GACATCGTGA ACTCGACTCC GCATACCGTC ACGGTCGAGC TCGTCTCCGA GGTCATGGCT GACGGCGAAC GGGTCGCAAG GAACGCTGCC CCCGTCACCG TCCGTCCCGG CGAAACGGCG ACGGCAAGGC AACGGCTGTA TGTCGGTAGC CCTCGACGGT GGGGAGTCGA CCACCCCCAC CTCTATCGGC TCCGGACGGG ACTCTGGAAT GCGAACACAG GGCTCGAGGA GGTCGCGACA GACTTCGGAA TACGCACTAT TCAGGTAGAC CCTACGCACG GTCTACGGAT CAATGGCGCG ACGGTGAAGC TGCGCGGTGC GTGTATCCAT CACGACAATG GTATCCTTGG CGCGGCGGCC ATTTCGCGGG CGGAGGAGCG ACGGGTCGAG ATCCTGAAGG GAGCCGGTTT CAACGCCGTT CGGGCGTCAC ACAACCCGCT GAGTAAAGCG ATGCTCCACG CGTGCGACAG ACTAGGGATG CTCGTACTGG ACGAGGCCTT CGACGTTTGG ACCCACGCGA AGATGCCCTT CGACTACTCG CTGGCTTTCC CTGAATGGTG GCAGCGAGAT ATCGAGTCGA TGGTCAAGAA GGACTTCAAC CATCCTAGCG TGATCCTGTA CTCGATCGGT AATGAAATCC CCGACCTCGC GTCGCCGCTT GGTTCGGCAT GGAGTCGGGA CATCTCCGAG AAGATCGGCG AGATCGACGG AACCAGGTTC ACCACCAACG CGGTGAATGG CTTCCTCGCC GTCATGTCCG ATCTGGTGAA GCAGGTTGAT GCACGTCCGG GTCCGGGGCA AACGGGTGGT CTCAACACGA TGATGGCCTC GATCGGCGAC GTGCTGGACC AGATCAATGC ATCCGAAATC GTCAGTGAAC GTACGAGAGA AGCACACGCG GTGGTCGACG TCTCCGGGCT GAACTACGGG GCCTCGAGGT ACGAGATTGA CCGCGATCTC TTTCCTGACC GAGTCATCCT GGGAACGGAG AGCCACGGAC CTCGGATCGA CCGGATCTGG CATCTGGTCG AGGAAAACAG TCGCGTCATC GGCGACTTCA CGTGGACTGG GTGGGACTAT CTCGGTGAAG CTGGCATCGG TCGTGTGTCA TATCCGGGCG AGCAGTCGGC TGAGGGCGGT CTCCTAGCCC CCTTTCCCTC GATTCTTGCC GGTAGCGGAG ATATCGACAT CACTGGCTTC CGGCGGCCGA TGTCATACTT TCGGGAAACG GTGTTCGGCC TCAGGAGTCA GCCGTACGTC GCTGTGCACC GTCCCCAGTA CCACGGTAGG AAACGTGTTG CCGGGCCGTG GTCCTGGAGT GACACGGTAT CGAGCTGGGC CTGGGGCATC GCCTCTGGTT CTCCGGTCGT CGTCGAGGTT TACAGCAACG CGGAAGAGGT GGAACTTCTC CTCAATACCC GGTCATTGGG CCGTAAGTCC GTTGGCAGTG AGCGGGCCTT CTCGGTGTTC TTCGACTGTG CGTACGAACC CGGGCGGCTT ACCGCGGTGG CCTACACGGC GGGCGTCGAG CAGGGCAGGA CCTCGCTCCA GTCCTCGGAG GGGGGTACCC GGTTGGCGGT GCGCGCCGAC CGAACGACAT TACGAGCCGA CGACACGGAT CTCGCCTTCC TGGAGATCGA ACTCGTTGAC ACCGCCGGGA CCTGCCTGGT GGATCGTGAA CTCGAGATAG TCGTAGTCGT CGAGGGCCCG GCTGTTCTGC AGGCGTTGGG TAGCGCTCGT CCAGACACAG AAGAGAGGTA CGACGGACAC ACACATCGGA CCTATGACGG GCGGTTGCTC GCGGTTGTAC GGCCGGTAGC TGTTGGAGCT GTGGTCGTGA AGGCAACAGC AGAGAGCCTC GCCAGCGAAG TCATACGGCT AGATGTCGTC CCCTCCGATT CCCCGCCGAC GAAACCGCCG CCAGTGATTT CCGTGAATCG ACCGGCGTAG
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Protein sequence | MTRVSFNRGW TVRPRTSLFG EVSGNAPAAA GVTLPHDAMI VLDRSAEHSG GAETGYFPDG VVEYVKSFEV PESYRDKRVI LEFEGVYRDA QVYVNGAFAG QRPYGYSLFR VSLDPFLRHG QANEVRVEAR AHSDSRWYSG LGIHRPVSLI VNEPVHIAAD GVRITTPDVD DERAVVAVAT DIVNSTPHTV TVELVSEVMA DGERVARNAA PVTVRPGETA TARQRLYVGS PRRWGVDHPH LYRLRTGLWN ANTGLEEVAT DFGIRTIQVD PTHGLRINGA TVKLRGACIH HDNGILGAAA ISRAEERRVE ILKGAGFNAV RASHNPLSKA MLHACDRLGM LVLDEAFDVW THAKMPFDYS LAFPEWWQRD IESMVKKDFN HPSVILYSIG NEIPDLASPL GSAWSRDISE KIGEIDGTRF TTNAVNGFLA VMSDLVKQVD ARPGPGQTGG LNTMMASIGD VLDQINASEI VSERTREAHA VVDVSGLNYG ASRYEIDRDL FPDRVILGTE SHGPRIDRIW HLVEENSRVI GDFTWTGWDY LGEAGIGRVS YPGEQSAEGG LLAPFPSILA GSGDIDITGF RRPMSYFRET VFGLRSQPYV AVHRPQYHGR KRVAGPWSWS DTVSSWAWGI ASGSPVVVEV YSNAEEVELL LNTRSLGRKS VGSERAFSVF FDCAYEPGRL TAVAYTAGVE QGRTSLQSSE GGTRLAVRAD RTTLRADDTD LAFLEIELVD TAGTCLVDRE LEIVVVVEGP AVLQALGSAR PDTEERYDGH THRTYDGRLL AVVRPVAVGA VVVKATAESL ASEVIRLDVV PSDSPPTKPP PVISVNRPA
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