| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2745 |
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| Symbol | |
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| ID | 5671136 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 3248284 |
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| End bp | 3250809 |
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| Gene Length | 2526 bp |
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| Protein Length | 841 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641241657 |
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| Product | Type IV secretory pathway VirD4 protein-like protein |
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| Protein accession | YP_001507077 |
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| Protein GI | 158314569 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0325821 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGATCG TGACCATGGA CCTGCTCGCC GCGGCGGCCA CCACGCCGTC GTCGCCACTC
ACGACCTACC TGACCGACCC CGCCGGCTTC CTCCACCAGC TGCTCGGCCA CCTACGTGCC
TGGGCCGTGG TCTGGGGACC CGTCGCCGGC CCGCTGGTCG CTCTCACCGC CGCCGGCCTG
CTCACCCTGC GCCGGCGGCT ACGCCGCCGC TACCAGCAAC GACTCACCGC CGGCGCCCGC
CTCGTGACCG TCCTGGCCCC GCCCACCGTC GACCCGGCGG GCGCGGGCGC GCTGTGGGCG
AACCTGCTCG GCCTGCTGCG CCCGTCCTGG CGACGGCTGG TCGGCCAGCC GCACCTCGTG
TGGGAGTACC TGTTCGACGC CGACGGGGTC CGCATCCAAA TCTGGGTCCC CGGTGTGGTG
CCCGAGGGCT TCGTGGAGAG GGCCGTCGAG GCGGCCTGGC CCGGTGCCCA CACCCGCACC
ACCCCTGCCC GAGCGCCGCT GCCCGTCCTG GCCCGGCCCG GCCGGCGGCT GCTGGCCGCA
GGCGGGGAAC TCCGCCTGGG CCGGCCGGAA GCGCTCCCGA TCCGTACGGA TCATGACGTT
GACCCGGTCC GTGCACTGCT CGCCGCGCCC GGCGGGCTGG CGCGCACCCA GCGGGCGGTC
GTGCAGATCC TGGCCCGGCC GGTCACCGGC CGCCGCGTCG CCAAAGCCCG CCGGTCAGCC
CGCCGCGTGC GTGCTGGCGG CTCGGCCACC CTGCTCGGCG GGCTGCTCGA CCTGCTCACC
CCCCACACGG GCCGAACCCG GCGCACTCGG CGGACCCCCG CACCGACGAA GGTCGATCAT
CAGACCTCGC TCGCGCTGTC GGCGGAGGAC CGCGCGATCG TCACGAAGGG TCGCGGCGCC
CAGTTCGAGG TCCGTGTCCG CTACACCGTC GTCGCCGTTC TCGACGACAC CGCTGACGAG
GACACCGCCG CGCGGGTCGG CGGGCAGCTG CGCGGCCGGG CACACGCGAT CGCCTCGGCG
TTCGCGGCCT ACGGCGAGCA CAACTACTTC CAACGCGCCC GGGTGCGCCG CCCGCTGCCC
GTCCTCGCCG CGCGCCACCT CGGCCGCGGG GACCTGCTGT CCGTCGCCGA GGTCGGCGTG
CTCGCCCACC TGCCGGTCGA CGAGGCGACT CCCGGCCTGC AACGCGCCGG CGCGAAAGCC
GTCGCCCCGC CACCCGGCGT CGCTGGCGCC GCGCCGAATG TCCGTCCACT CGGCCGTTCC
GACGGTGGAC ATGCCCGCCC GGTCGGTCTG CGGGTTCCCG ACGCCCGCCA CCACCTACAC
ATCCTCGGCG CCACCGGCTC CGGCAAGTCC GAACTGCTCG CCCGCATGAC CTTGGACGAC
GTCGCCGCGC GCCGGGGCGT GGTCAACGTC GACCCGAAGG GCGACCAGGT CATCGACATC
CTTGCCCGCT ACCCCCTCGA CGCCGTCGAC CGCCTCGTCC TGTTCGACGC CGAATCGTCG
GGCCGGCCGC CGTGCCTCAA CCCGCTTGAC CAGCCCGACC GGACACGCGC CGTCGACAAC
CTGGTCTCCA TCTTCTCCCG GGTCTACCAC GAGTCCTGGG GCCCACGGAC CGACGACATC
TTCCGCGCCG GACTGCTCAC CCTCGCCGCC CAACCCGAGG TCCCTGTCCT GACCCAGCTA
CCCCGGCTCC TGACCGACGG CGCCTACCGG CAGCGCCTCG TCGGCGAGAT CAAAAAAGGC
GACGGCAACG ACATCCTGGC CGGCTTCTGG CAGTGGTACG AAGCACTCTC CGAACCCGCG
CAGGCGCATG CCGTCGCCCC GCTGATGAAC AAACTCCGCG GGTTCCTACT ACGGCCGTTC
GTGCGCGCCG CGATCGCCGC CGGCCCCTCG ACGGTGGACA TGGACACCGT GCTCAACGAC
GGCGGGGTCT GCCTGGTCCG CATCGCCCAA GACGCCCTCG GGGTCGAGAC CGCCGCGCTC
ATGGGCTCCA TCGTCGTGTC CGCCGTCTGG CAGGCCACCA CCCGGCGCGC CCGCATGCCC
CAGGGAAAGC GACCCGACGC CAGCCTGTAC TTGGACGAAG CACACAACTT CCTCACGCTT
CCGTACGCGC TGGAAGACAT GCTCGCCGCC GCCCGCGGCT ACCGACTCGG GATCACTCTC
GCGCACCAGA ACCTCGCCCA GCTGCCCCGG CACCTGGAAG AAAGCATCGC CGCGAACGCC
CGCAGCAAGA TCTACTTCAC GATGTCGCCC GCGGACGCGA AACGGCTCGT CCGCCACGTC
GAGCCTCGCC TGTCTGAGCA CGACCTGGCC AACCTCGGCC GCTTCCATGC CGCCACCCGC
CTCGTCGTCG TCGGCGAAGA GGCACCGGCG TTCACGCTGC GCACCGAGAA GCTCCCCGCC
CCGGTACCGG GCCGCGCCGC GCAGATCCGC CGCGAGCTGC GCCGCCGCGC GCCCACCCCC
ACACCGACGC CGCCGGACCC GGCGGCCCCG CAGCCGCAGG CCGACCCCCG CCGATCCGCC
CGCTGA
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| Protein sequence | MEIVTMDLLA AAATTPSSPL TTYLTDPAGF LHQLLGHLRA WAVVWGPVAG PLVALTAAGL
LTLRRRLRRR YQQRLTAGAR LVTVLAPPTV DPAGAGALWA NLLGLLRPSW RRLVGQPHLV
WEYLFDADGV RIQIWVPGVV PEGFVERAVE AAWPGAHTRT TPARAPLPVL ARPGRRLLAA
GGELRLGRPE ALPIRTDHDV DPVRALLAAP GGLARTQRAV VQILARPVTG RRVAKARRSA
RRVRAGGSAT LLGGLLDLLT PHTGRTRRTR RTPAPTKVDH QTSLALSAED RAIVTKGRGA
QFEVRVRYTV VAVLDDTADE DTAARVGGQL RGRAHAIASA FAAYGEHNYF QRARVRRPLP
VLAARHLGRG DLLSVAEVGV LAHLPVDEAT PGLQRAGAKA VAPPPGVAGA APNVRPLGRS
DGGHARPVGL RVPDARHHLH ILGATGSGKS ELLARMTLDD VAARRGVVNV DPKGDQVIDI
LARYPLDAVD RLVLFDAESS GRPPCLNPLD QPDRTRAVDN LVSIFSRVYH ESWGPRTDDI
FRAGLLTLAA QPEVPVLTQL PRLLTDGAYR QRLVGEIKKG DGNDILAGFW QWYEALSEPA
QAHAVAPLMN KLRGFLLRPF VRAAIAAGPS TVDMDTVLND GGVCLVRIAQ DALGVETAAL
MGSIVVSAVW QATTRRARMP QGKRPDASLY LDEAHNFLTL PYALEDMLAA ARGYRLGITL
AHQNLAQLPR HLEESIAANA RSKIYFTMSP ADAKRLVRHV EPRLSEHDLA NLGRFHAATR
LVVVGEEAPA FTLRTEKLPA PVPGRAAQIR RELRRRAPTP TPTPPDPAAP QPQADPRRSA
R
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