| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2552 |
|---|
| Symbol | |
|---|
| ID | 5670946 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 3035815 |
|---|
| End bp | 3039129 |
|---|
| Gene Length | 3315 bp |
|---|
| Protein Length | 1104 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641241468 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001506888 |
|---|
| Protein GI | 158314380 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4995] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGAACAGT TCCGAGCGCG ACTCGACAGA CGTAGCCCCG TCTTAACCGC CCGTCTGCAG
ATCACGGCGA TGCGCGCTGA AGAACTTATG CGGAACACGG TGCGTACCGG TGACCGTGCC
GGGCTGACCG CGGCGATCGA CCTGCATCGG CAGGCGCTGG ACATCTGTCC TTCCGACCAT
CCGGCGCAGG CCGCGATACT GGCCAATCTG GCCGCCGCAC TGTATGTCCG GTTCGACTGG
TCAGGCAGCA GGGCAGATCT GGATGAGGCC GTCGTCGCAG GCCGCGCGGC GCTGGCCGCC
CATCGACCCG GCGATCCCAA CCTGGCCGGA TGGCTGTCCA ACCTCAGCGC GGCGTTGCGT
ACCCGGTCCG AGCGGTGGGG CAGCAGGGCG GATCTGAACG AGGCCATCAG CGTGGGCCGC
CACGCGGTGG CTGCCAGCCC ACCCGACCAT CCGGAAACGA TCAAACGACT GGGCAACCTG
GCCGCCGCGC TGCGTATCCG GTCCGAGTGG ACGGGCAGCG AGGCGGATCT GGACGAGGCC
GTGAGCGCAG GCCGCGAAGC GCTGGCCGTC AGCTCACACC ACCCGGAAAG AACCACGATG
CTGGCTAACC ATGTGGCCGC GCTACGTCTC CGGTCCGAGC GGACGGGCAG CCAAGCGGAC
CTGGATGAGG CCATCAGAGC CGGCCGGGCG GCGCTGGCCG CCTGGGCATC TGGCGACCCT
GCGAAGGTCG CTCTGGTAAC GAACCTGGGC ACGGCGCTAC AGGCTCGGTT CGAACTGTTG
GGCAACCGGG CGGATCTGGA CGAGGCCATC GGCGCCGCCC GCGACGCGGT GACGGCGAGT
CCACCCGACC ATCTGGACCG TGCCACGGCG GTGGCGAATC TTGGTCTTGC ACTCCGTATC
CGATCGCAGC GGACGGGCAG CGAGGCAGAT CTGGATGAGG CCGTGAGCAC CGGCCGGGCG
GCGCTGGCAG CCAGCCCACC TGACCATCCC CACCGGGCCG GATGGCTGTC CAACCTCGCC
GCCGCGCTGC TTATCCGGTC CGAGTGGACG GGAAGCCAGG CGGATCTGGA CGACGCCGTC
AGCGCCGGCC GCGACGCAGT GGCCAGCAGC CCACCCGACC ACCCGGACAG AGGCACCCGG
CTGGCGAACC TCAGCCGCGC CCTGCTGACC CGGTTCGAAC TGTTGGACAG CCAGGCGGAT
CTGGACGAGG CGGTCACCGC CGGCCGCGAC GCAGTGGCCA GCAGCCCACC CGACCACCCG
GGCATGGCCA GCTACCTGTC CAACCTCAGC CGCGCCCTGC TGACCCGGTT CGAACTGTTG
GACAGCCAGG CGGATCTGGA CGAGGCGGTC ACCGCCGGCC GCGACGCGGT GGCCACCAGC
CCACCCACTC ATCCCTACCG CGCCGCGTGG CTTTCCAATC TGGGCATCGC CCTGCTGACC
CGGTTCGAAC GATCACCCAG CCAGGCCGAT CTAGACGAGG CGGTCATGGC GTGCCGCGGG
GCGCTGGACG CCAGCCCGCC CGATCATCCC TACCGCGCCG CATGGCTTTC TAACCTAGGC
ACCGCCCTAA GCCTCCGGTT CGAGCAGTAT GGCGATCAGG CGGATCTGGA CGAGGCGATT
GCCGCGAGTC GGGCCGCCGT GGCCGTCGAG GTGGCGTCAC CTCGGCTTCG CGCGCGGGCC
GCACGCGGTT GGGGACACAC CGCTGCCGAC GGGATGCGGT GGGACGAGGC CGTCGCGGGT
TTCGCGGCAG CCGTTGACCT CCTGGGACGG GTGGCACCGC GTAGCCTCGC CCGCGGCGAC
CAGGAACATC TACTCGCCGA GCTAGGCGGC CTGGGATCGC AAGCGGCGGC ATGCTGCGTG
CACGCCGGCC TCCCGGAACG CGCGATCGAA CTCTTCGAGC AGGGCCGTGG GGTCCTGCTG
GGTCAGGCAT TGGACACCCG CACCGACCTG ACCGCGCTCG CTGAGCAGTT TCCGGACCTA
GCCAGACGGT TCATCGCTCT GCGTGACGAC CTCGACAGGG TCGATGGCTC GGGCACTCGA
CCGGTGACGA TACCTCCCGG TTGGGACCAT AGCGTCGACA TAACACACGG CGACGTGGAG
CGACGCCGGC AGCTAGCCGA CGCATTCGAC CAGACGATCG GCGAGATCCG GGACCTGCCG
GCCTTCGCGC GTTTCCTGCG TCCACCACCG GTGCAGGACC TGACGGCGGC TGCGGCGAGC
GGTCCGGTCG TCGTCGTCAA CGTCTCCCGG TTCGGCTCGC ACGCGCTGAT CCTGACCACC
GGAGGTGTCC TGGAGCCGGT GCCGCTGGTG GCTCTAACTA CCGAGGCCGT TTACGACCAG
GCGGACGGAT TCCTCGCAGC CCTCGACGAG GTGTCCTCGC CGGACGGAGG CGCCGGAGGT
TGGGGTGCCG CGCAACGGCG GCTGACGGAC ACGCTCGGCT GGCTGTGGGA CGCCGCCACC
GGCCCGGTCC TGGACCGGTT AGGCATCACC GGACCGCCCC AGAAGGACGA GGAGTGGCCG
CGGCTGTGGT GGTGTGTGTC CGGACTGCTG TCGTTCCTGC CATTGCACGC GGCCGGCCAC
CACGCCACCC GCTTCGATCC CGCCCCGAAA ACGGTGGTTG ACCGAGTGGT GTCGTCCTAC
ACCCCGACCA TCCGGGCGCT GATCTACGCC CGCCGGACCC ACTCAGGCGA CAGGGACGTC
GACCGAGGAC GGCTCGGTTC GGACAGCCGG CTGGTGGTGG CGATGCCGCA CACCCCTGAG
GCCGCTGATC TTCCCGGTGC GGATGCGGAG GTCGCCATGC TCCAGCAGCG TTTCCCGGAC
CGGACCAGCA CGCTTGTCGG ACCTCAGGCC ACCCGCGAGG CGGTGCTTGC CGCGCTGCCC
ACGGCGGGGT GGGCGCATCT CGCCTGCCAC GGGTCGAGCG ACCCCAGTCA CCCTTCTGCC
AGTCGGCTGC TCCTCCAAGA CCACCGGCAG CAGCCGTTGA CCGTGGTCGA CGTGGCCCGG
CTGCGTCTGG ACGATGCTCA GCTGGCGTTC CTGTCGGCCT GCTCGACAGC CCGCCCAGGT
AACCGGCTGG CCGACGAAGC GATCCACCTC GCCTCGGCGT TCCAGCTAGC CGGCTACCGA
CACGTGATCG GCACCCTGTC GCCGATCAAT GATCGGCACG CCGCGACCCT CGCCCGCGAT
ATCTACACCG CCCTCGATGA CGCCGACGGC GTCATCGACG CAGCCGCCGC GCTGCATGCC
GCGACCCGCC GGCTGCGCAA CCGATGGGCA CACATGCCGT CGGTGTGGGC GTCGCACATC
CACAGCGGCG CCTGA
|
|---|
| Protein sequence | MEQFRARLDR RSPVLTARLQ ITAMRAEELM RNTVRTGDRA GLTAAIDLHR QALDICPSDH
PAQAAILANL AAALYVRFDW SGSRADLDEA VVAGRAALAA HRPGDPNLAG WLSNLSAALR
TRSERWGSRA DLNEAISVGR HAVAASPPDH PETIKRLGNL AAALRIRSEW TGSEADLDEA
VSAGREALAV SSHHPERTTM LANHVAALRL RSERTGSQAD LDEAIRAGRA ALAAWASGDP
AKVALVTNLG TALQARFELL GNRADLDEAI GAARDAVTAS PPDHLDRATA VANLGLALRI
RSQRTGSEAD LDEAVSTGRA ALAASPPDHP HRAGWLSNLA AALLIRSEWT GSQADLDDAV
SAGRDAVASS PPDHPDRGTR LANLSRALLT RFELLDSQAD LDEAVTAGRD AVASSPPDHP
GMASYLSNLS RALLTRFELL DSQADLDEAV TAGRDAVATS PPTHPYRAAW LSNLGIALLT
RFERSPSQAD LDEAVMACRG ALDASPPDHP YRAAWLSNLG TALSLRFEQY GDQADLDEAI
AASRAAVAVE VASPRLRARA ARGWGHTAAD GMRWDEAVAG FAAAVDLLGR VAPRSLARGD
QEHLLAELGG LGSQAAACCV HAGLPERAIE LFEQGRGVLL GQALDTRTDL TALAEQFPDL
ARRFIALRDD LDRVDGSGTR PVTIPPGWDH SVDITHGDVE RRRQLADAFD QTIGEIRDLP
AFARFLRPPP VQDLTAAAAS GPVVVVNVSR FGSHALILTT GGVLEPVPLV ALTTEAVYDQ
ADGFLAALDE VSSPDGGAGG WGAAQRRLTD TLGWLWDAAT GPVLDRLGIT GPPQKDEEWP
RLWWCVSGLL SFLPLHAAGH HATRFDPAPK TVVDRVVSSY TPTIRALIYA RRTHSGDRDV
DRGRLGSDSR LVVAMPHTPE AADLPGADAE VAMLQQRFPD RTSTLVGPQA TREAVLAALP
TAGWAHLACH GSSDPSHPSA SRLLLQDHRQ QPLTVVDVAR LRLDDAQLAF LSACSTARPG
NRLADEAIHL ASAFQLAGYR HVIGTLSPIN DRHAATLARD IYTALDDADG VIDAAAALHA
ATRRLRNRWA HMPSVWASHI HSGA
|
|---|
| |