| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2354 |
|---|
| Symbol | |
|---|
| ID | 5670751 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 2800036 |
|---|
| End bp | 2800911 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641241272 |
|---|
| Product | putative dehydrogenase |
|---|
| Protein accession | YP_001506693 |
|---|
| Protein GI | 158314185 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0342021 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGACAG TGGCGATCGT GAGTCCTGGC GCGATGGGCT CGGCGCTGGG GCGCGGCTAC
GTCGAGGGCG GTGCCAGAGT CATAGCCTGC GTGGCGGGCC GATCAGACCG GACCCGCGCG
CTCGCCCACG GACTGGAACT GACCGGCTCC CTGGAGGAGG CGGTTGGCGC GGCGGACGTC
GTTCTGTCTG TTGTTCCGCC TGGCGAGGCG CTCGCGGTGG CCGGGATGAT CCGGCGGTCG
GCTGTCTCAG GGGGCGTCTC GCCGCTGGTC GCGGATCTCA ACGCTGTTGC CCCCGCGACC
GTCCGGCGCC TGGAGCGGGC CCTGGACGGG CTGGACCTGG TCGACGGATC GATCTCGGGC
GGGCCGCCGG ATCCGCGGGC GGGCGGCGGC CGGACCCGGC TGTACGTGAG TGGGCCGCGG
GCGACGGAGA TCGCCGACCT GGTCCATCCC CGGCTTGATA CGCGCATCCT CTCCGGAGCG
GCCGGAGTCG CGAGCGCGCT GAAGATGAGC ACCGCCAGCG TCTACAAGGG TCTCGCGGCA
GTCTTTCTGC ACGCCGCCGT CACCGCGAAC ACGGCCGGCG TGTTGGACGC GATGCTTGAT
GACCTCGCGC CGAGTTTTCC CGAGCAGGTC GCCGAGCTGG GGCCCTGGCT TGCGTTATCG
GCAAGCAAGG CACACCGTTA TGTCGCCGAG ATGCGCGAGA TCGCCGTGAC GCAGGACGCC
GCGGGGCTGT CGCCGGAGCT GTTCCAGGCG ATGGCGGCGG TGTGGGAGCA GGTGGCGGCA
TCCCCACTGG GAAGGGTCGT GCCCGAGCAG GCTGCCGCAT TCACCAGGGC GGCCGAGGCC
ATCCAGGCAC TCGACTTCCG CGCGTCTGAG CCCTGA
|
|---|
| Protein sequence | MVTVAIVSPG AMGSALGRGY VEGGARVIAC VAGRSDRTRA LAHGLELTGS LEEAVGAADV
VLSVVPPGEA LAVAGMIRRS AVSGGVSPLV ADLNAVAPAT VRRLERALDG LDLVDGSISG
GPPDPRAGGG RTRLYVSGPR ATEIADLVHP RLDTRILSGA AGVASALKMS TASVYKGLAA
VFLHAAVTAN TAGVLDAMLD DLAPSFPEQV AELGPWLALS ASKAHRYVAE MREIAVTQDA
AGLSPELFQA MAAVWEQVAA SPLGRVVPEQ AAAFTRAAEA IQALDFRASE P
|
|---|
| |