Gene Franean1_2202 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_2202 
Symbol 
ID5670601 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp2634451 
End bp2635182 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content73% 
IMG OID641241122 
Productprotein tyrosine/serine phosphatase 
Protein accessionYP_001506543 
Protein GI158314035 
COG category[T] Signal transduction mechanisms 
COG ID[COG2365] Protein tyrosine/serine phosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.534636 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.21358 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGAACAG AAGATCTCGC CACGGAACGG CTCGCCAACC TGCGGGACGT CGGCGGCATG 
ACCACCACGG ACGACCGCGT CACCAACACG GGCGTGCTGT ACCGCAGCGA GATGCCCCGG
GTCGAGGACG CCCGGCCGGC GACGGAGTTC ACCTGGCCCC CGCCGACCGT GGTCGATCTG
CGCTCCGCGG TCGAGCGGGG GAGCTCCCCG CACCCGCTGT CGCTGATCGG CTCGGAGATC
CACGTGATGC CCCTGCTCGG CGAGGAGACC GGCCGGGTCA GCGACTCCCT GCCGCCGGAC
GCGCTCGCGG GCGGCCTGCG CACGCTGTAC GCCGCGATGC TCGACATCGC GACGCCCCGG
CTGGTGGAGA TCCTCGACCT GGCGGCGGAG GCCCCCGGTC CGCTCCTGGT GCACTGCGCG
GCCGGCAAGG ACCGCACGGG CGTGGTCGTC GCCCTCCTCC TGCGCCTGGC CGGTGTCGTC
CCGGAGCAGG TGGTCGCCGA CTACCTGGTT ACCGGCGAGA ACATGCCGGG CGTGCTGCGC
CGCCTGCGAG GGCACGCGAT CCTCCCCGAC GGCCGGGTCG TCGACAAGGA GGTCACCAAG
GTCTCGGTGG ACGCCGTCAA GCAGGTGCTG ACCATCATCG ACGGGCACCC GCAGGGCCCG
GAGGGCTGGT TCCTCGACCG CGGCGCCCGG CCCGAGGCCG TCGAACTCTG GCGCAAGCGC
ATCCTGGGCT GA
 
Protein sequence
MGTEDLATER LANLRDVGGM TTTDDRVTNT GVLYRSEMPR VEDARPATEF TWPPPTVVDL 
RSAVERGSSP HPLSLIGSEI HVMPLLGEET GRVSDSLPPD ALAGGLRTLY AAMLDIATPR
LVEILDLAAE APGPLLVHCA AGKDRTGVVV ALLLRLAGVV PEQVVADYLV TGENMPGVLR
RLRGHAILPD GRVVDKEVTK VSVDAVKQVL TIIDGHPQGP EGWFLDRGAR PEAVELWRKR
ILG