Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_1994 |
Symbol | |
ID | 5670395 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 2396467 |
End bp | 2397273 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641240915 |
Product | GntR domain-containing protein |
Protein accession | YP_001506337 |
Protein GI | 158313829 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.255259 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0993193 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCAGCG TGGAGCGGGT GCGCCCCGCC TACGTCCAGG TTGCGGCTCA GCTACAGGAG CTGATCGTGC GCGGCGATCT GACCGCCGGT CAGCGCCTGC CCGTCGAGGC CGAGCTGTCG ACGATGTTCG GCGTCAGCCG GTCCACGGTC CGCGAGGCGC TGCGGCTGCT GTCGTCCCAG CACCTGGTCG AGACGCGGCG GGGAGTCCAC GGCGGCACCT TCGTCGCGGC GCCGGACACC GGCCTGATGG GCGATTTCCT CGAGACCGGC CTCGGCCTGC TCTCGGGCGC CGACCTGGTC AGTGTGGATC AGCTGATCGA GGCCTGTGAC CTGCTCGAGG TCCCGGCCGC CCGGCTGGCC GCCGTCCGGC GGACGCCCGC CCAGCTCGAG ATTATCCGGA AAGCGACCAC GGCCACCGAA CGGATCGAGG ATCCGGTCGA ACGGTACGAG GGCAGCAACG GATTCCACGC CTCGATCCTG GCCGCCTGCG GCAATCCCCT GCTGAATCTG GTGGCGACAC CGGTCTTCAA CGTTCTACGG ACCCGCTTCC AGCGTTCGAG CGTCGACGCC ACATTCTGGG AACGCTCCGC CCGGCAGCAC CACGAGATCT ACGAGGCCAT CGAACGCGGC GACGCCGAAC AGGCCGGAGT TCTGATGCGC GCCCACATAG ACGAGTTGCG CGTTCTCGTT CCCGGCGGGG TGGAGGCCGT GCGACGGCGG ACCGTCGGCA CCGGATCGGT TGAGGCCGCG AGTGCGATCG CCGCGGCCAC CGAATCGCCG GCGGCCGCGG GCTCGGCCAC CGTCTGA
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Protein sequence | MLSVERVRPA YVQVAAQLQE LIVRGDLTAG QRLPVEAELS TMFGVSRSTV REALRLLSSQ HLVETRRGVH GGTFVAAPDT GLMGDFLETG LGLLSGADLV SVDQLIEACD LLEVPAARLA AVRRTPAQLE IIRKATTATE RIEDPVERYE GSNGFHASIL AACGNPLLNL VATPVFNVLR TRFQRSSVDA TFWERSARQH HEIYEAIERG DAEQAGVLMR AHIDELRVLV PGGVEAVRRR TVGTGSVEAA SAIAAATESP AAAGSATV
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