Gene Franean1_1479 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_1479 
Symbol 
ID5669883 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp1770166 
End bp1771026 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content67% 
IMG OID641240399 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001505825 
Protein GI158313317 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGGCC CGCGGACCGT TCTGATCACC GGCGCCACCG ACGGACACGG CCGTGCACTG 
GCGCACCGGC TCGCCGCCGA AGGCACCACC CTGATCCTGC ACGGTCGTGA CCCCGACAAG
CTCGCGCGTA CCGCCGACGA CATCCAGACC ACCCACCGTG TCTCGCGGCC CAGGACCATG
CAGGCGGATC TGGCCGAACT GGCCCAGGTG CGCCGCCTCG CCAGCGACGT GCAGGCGGTC
GCCGACCGGC TCGACGTGCT TGTCAGCAAC GCGGGCATCG GTGCCGGCCA CCCCGACGGA
CATACCCGCC GTACCAGCGT CGACGGTTAT GAGCTGCGCT TCGCCGTCAA CTACCTGGCG
GGGTTCCTTC TCACCCTCGA TCTGCTCCCG CTGCTGCGCC GGTCTGCCCC AGCCCGCATC
GTGAACGTCG CCTCCATCGG CCAGCACCCT CTTGACCTGG GGGACCTGAT GATCGAGCGC
GGTTACAGCG GCACCCGCGC CTATGGCCAA AGCAAGCTCG CTCAGATCAT GTCCGGTTTC
GAGCTGGCTC AGCGGCTGCC CGGCGCCGAA GTAGCCGTCA ACAGCCTGCA CCCGGCGACC
TACATGCCAA CGAAGATCGT CTTGGCGGAG ATCGGCCACC ACATCGACAG CATCGACGAC
GGTGTTTCCG CCACCCACCG GCTCGTGACC GACGCCGCCT TCGCTGGTGT GACCGGCCGC
TTCTTCGACC GGACTAGCGA CACCAGGCCA AACATCCAGG CATACGACGA GCAGGCACGA
GCTGAACTGT GGAGACGAAG TCTCGAACTC GTAGACCGAA GTGGAGTCCA CGGACGTGGC
GTACGAGGAG TAATGATCTA G
 
Protein sequence
MTGPRTVLIT GATDGHGRAL AHRLAAEGTT LILHGRDPDK LARTADDIQT THRVSRPRTM 
QADLAELAQV RRLASDVQAV ADRLDVLVSN AGIGAGHPDG HTRRTSVDGY ELRFAVNYLA
GFLLTLDLLP LLRRSAPARI VNVASIGQHP LDLGDLMIER GYSGTRAYGQ SKLAQIMSGF
ELAQRLPGAE VAVNSLHPAT YMPTKIVLAE IGHHIDSIDD GVSATHRLVT DAAFAGVTGR
FFDRTSDTRP NIQAYDEQAR AELWRRSLEL VDRSGVHGRG VRGVMI