Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_1479 |
Symbol | |
ID | 5669883 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 1770166 |
End bp | 1771026 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641240399 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001505825 |
Protein GI | 158313317 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCGGCC CGCGGACCGT TCTGATCACC GGCGCCACCG ACGGACACGG CCGTGCACTG GCGCACCGGC TCGCCGCCGA AGGCACCACC CTGATCCTGC ACGGTCGTGA CCCCGACAAG CTCGCGCGTA CCGCCGACGA CATCCAGACC ACCCACCGTG TCTCGCGGCC CAGGACCATG CAGGCGGATC TGGCCGAACT GGCCCAGGTG CGCCGCCTCG CCAGCGACGT GCAGGCGGTC GCCGACCGGC TCGACGTGCT TGTCAGCAAC GCGGGCATCG GTGCCGGCCA CCCCGACGGA CATACCCGCC GTACCAGCGT CGACGGTTAT GAGCTGCGCT TCGCCGTCAA CTACCTGGCG GGGTTCCTTC TCACCCTCGA TCTGCTCCCG CTGCTGCGCC GGTCTGCCCC AGCCCGCATC GTGAACGTCG CCTCCATCGG CCAGCACCCT CTTGACCTGG GGGACCTGAT GATCGAGCGC GGTTACAGCG GCACCCGCGC CTATGGCCAA AGCAAGCTCG CTCAGATCAT GTCCGGTTTC GAGCTGGCTC AGCGGCTGCC CGGCGCCGAA GTAGCCGTCA ACAGCCTGCA CCCGGCGACC TACATGCCAA CGAAGATCGT CTTGGCGGAG ATCGGCCACC ACATCGACAG CATCGACGAC GGTGTTTCCG CCACCCACCG GCTCGTGACC GACGCCGCCT TCGCTGGTGT GACCGGCCGC TTCTTCGACC GGACTAGCGA CACCAGGCCA AACATCCAGG CATACGACGA GCAGGCACGA GCTGAACTGT GGAGACGAAG TCTCGAACTC GTAGACCGAA GTGGAGTCCA CGGACGTGGC GTACGAGGAG TAATGATCTA G
|
Protein sequence | MTGPRTVLIT GATDGHGRAL AHRLAAEGTT LILHGRDPDK LARTADDIQT THRVSRPRTM QADLAELAQV RRLASDVQAV ADRLDVLVSN AGIGAGHPDG HTRRTSVDGY ELRFAVNYLA GFLLTLDLLP LLRRSAPARI VNVASIGQHP LDLGDLMIER GYSGTRAYGQ SKLAQIMSGF ELAQRLPGAE VAVNSLHPAT YMPTKIVLAE IGHHIDSIDD GVSATHRLVT DAAFAGVTGR FFDRTSDTRP NIQAYDEQAR AELWRRSLEL VDRSGVHGRG VRGVMI
|
| |