| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1234 |
|---|
| Symbol | nrdR |
|---|
| ID | 5669647 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 1476776 |
|---|
| End bp | 1477336 |
|---|
| Gene Length | 561 bp |
|---|
| Protein Length | 186 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641240166 |
|---|
| Product | transcriptional regulator NrdR |
|---|
| Protein accession | YP_001505594 |
|---|
| Protein GI | 158313086 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains |
|---|
| TIGRFAM ID | [TIGR00244] transcriptional regulator NrdR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.260775 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00672311 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTGCC CTTTCTGCCG GCATCCCGAC AGCCGTGTCG TCGACAGCAG GGAGGCCGAG
GAGGGCGCCG CGATCCGGCG CCGGCGGTCG TGTCCGGCCT GTGGCCGTCG GTTCACGACC
ATGGAGGAGG CCTCCTTGCG GGTCCGTAAG CGCAGCGGGG CCACCGAGCC CTTCAGCCGC
GCGAAGGTGA TCGTGGGAGT GCGCAAGGCG TGCCAGGGCC GCCCCGTCCG GTCGGACGAT
CTGGCGCTGC TGGCGGAGCG GGTCGAGGAG ACGGTGCGCT CCTCGGGCTC CGCGGAGGTG
GCCGCCGAGG ATGTCGGCCG AGCGATCCTC GGCCCCCTCC GGGAGTTGGA CGAGGTGGCC
TACCTCCGCT TCGCCTCCGT CTACCTGGCG TTCGAGTCGC TCGGCGACTT CGAGGCGGCG
ATCGCGGCCC TGCGTGCCGA GTCGGCTGGC GGCGGTGAGC CGCCCGTCGC CGGAAAGCCG
ACCACGATGC CGGCGGCCAC CGGGGCCTCG GCTGTCATCG TTCCGGTGAC CACGGGCCCA
CGGGCGGCGG CCGGCCCCTG A
|
|---|
| Protein sequence | MRCPFCRHPD SRVVDSREAE EGAAIRRRRS CPACGRRFTT MEEASLRVRK RSGATEPFSR
AKVIVGVRKA CQGRPVRSDD LALLAERVEE TVRSSGSAEV AAEDVGRAIL GPLRELDEVA
YLRFASVYLA FESLGDFEAA IAALRAESAG GGEPPVAGKP TTMPAATGAS AVIVPVTTGP
RAAAGP
|
|---|
| |