| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0897 |
|---|
| Symbol | |
|---|
| ID | 5669311 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 1047606 |
|---|
| End bp | 1049075 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641239824 |
|---|
| Product | 4-aminobutyrate aminotransferase |
|---|
| Protein accession | YP_001505259 |
|---|
| Protein GI | 158312751 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
|---|
| TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.122318 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAGA CCGGCCAGGC TCAGCTGCCC CCGCGGGGCG GGCCCGGACT GCCGCAGGTC
CGCCGGCTGG TCACCGCGAT ACCCGGGCCG CGCTCGGTGG AGCTGGCGAA ACGCCGGTCC
CAGGCGGTGG CCCGCGGGGT CGGCGAAACC CTGCCCGTCT ACATCGCGGC GGCCGGCGGC
GGCGTGCTGG TGGACGTCGA CGGGAACTCG CTGATCGACT TCGGTTCCGG CATCGCGGTG
GTGAGCGTCG GCAACGCCGC CGACGCTGTC GTGGAGAACG TGCGCGAGCA GGCCGGGCTC
TTCACCCACA CCTGTTTCAT GGTGACGCCC TACGAGGGCT ACGTCACCGT GTGCGAGGAG
CTCGCCCGGC TCACCCCGGG CCGGCACGAG AAACGGTCCG CCCTGTTCAA CTCGGGCGCC
GAGGCGGTCG AGAACGCGGT GAAAATCGCC CGGGCCCACA CCGGACGGTC CGCCGTCGTG
GCGTTCGCGC ACGCCTACCA CGGCCGGACG AACCTGACGA TGGCGCTGAC CGCGAAGTCG
ATGCCCTACA AGCACCACTT CGGGCCGTTC GCCCCGGAGA TCTACCGGAT GCCGATGGCC
TACCCCTACC GCTGGCCGGG CGGCCCCGCC GCATGCGGCG AACAGGCCGC GGCCCAGGTG
GTGGAGACGA TCACCACGGA GATCGGCGCG GAGAACGTCG CCGCGCTCGT CATCGAACCG
ATCCAGGGCG AGGGCGGCTT CATCGTCCCC GGCACCGGCT TCCTGACCCG ACTGGCCGAG
TTCTGCGCGC AGACCGGGAT CGTGTTCGTC GCCGACGAGG TGCAGACGGG CTTCGCCCGC
ACCGGCGACA TGTTCGCCTG CGAGCACGAG GGCATCGTTC CGGATCTGAT CGTCACCGCG
AAGGGCATCG CCGGCGGCCT GCCGCTCGCC GCGGTCACCG GACGCGCGGA AATCATGGAC
TCACCCCACG TCGGCGGCCT CGGCGGGACC TACGGCGGCA ACCCGGTCGC CTGCGCCGCC
GCGCTCGGCG CGATCGCCAC CATCGAGCGC GGGGACCTCA CCGCCCGCGC CCGCCGCATC
GAGCGGATCG CGATGCCCCG CCTACTCGCC CTACGCGACC GCTACCCGTT CATCGGGGAC
GTCCGCGGCC GCGGCGCCAT GCTCGCCCTC GAACTCGTCG CCGACCCGAC CGAGGGAACG
CCACCCAACC AGCCCGCGCC CGCGCCCGAC CGGATGGTGA CGGTGGCCGC CGCGGCAGAG
GCCCACCGCC GCGGGCTCGT CCTGCTCACC GCGGGCACCT GGGGCAACGT GCTGCGCCTG
CTGCCCCCAC TCGTGATCCC CGACGACCTC CTCCTCGAGG GCCTGGACAT CCTGGACGAG
GCCTTCGCCG ACATCGCCAG GCACCGCCCC CGCCCCCGCC CCCGACTCCA GCCCCAGCCC
CAGCCCGACA GTCTGCCGCC GACCCACTGA
|
|---|
| Protein sequence | MSETGQAQLP PRGGPGLPQV RRLVTAIPGP RSVELAKRRS QAVARGVGET LPVYIAAAGG
GVLVDVDGNS LIDFGSGIAV VSVGNAADAV VENVREQAGL FTHTCFMVTP YEGYVTVCEE
LARLTPGRHE KRSALFNSGA EAVENAVKIA RAHTGRSAVV AFAHAYHGRT NLTMALTAKS
MPYKHHFGPF APEIYRMPMA YPYRWPGGPA ACGEQAAAQV VETITTEIGA ENVAALVIEP
IQGEGGFIVP GTGFLTRLAE FCAQTGIVFV ADEVQTGFAR TGDMFACEHE GIVPDLIVTA
KGIAGGLPLA AVTGRAEIMD SPHVGGLGGT YGGNPVACAA ALGAIATIER GDLTARARRI
ERIAMPRLLA LRDRYPFIGD VRGRGAMLAL ELVADPTEGT PPNQPAPAPD RMVTVAAAAE
AHRRGLVLLT AGTWGNVLRL LPPLVIPDDL LLEGLDILDE AFADIARHRP RPRPRLQPQP
QPDSLPPTH
|
|---|
| |