| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0872 |
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| Symbol | |
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| ID | 5669286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 1016766 |
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| End bp | 1018622 |
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| Gene Length | 1857 bp |
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| Protein Length | 618 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641239799 |
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| Product | N-succinyldiaminopimelate aminotransferase |
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| Protein accession | YP_001505234 |
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| Protein GI | 158312726 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
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| TIGRFAM ID | [TIGR03539] succinyldiaminopimelate transaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.726364 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.151599 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGGCTGC CCGACTTCCC ATGGGACCAC CTGGTCTCGT ACAAGGAGAA GGCGCGGTCG
CATCCGTACG GGCTGGTGGA CCTGTCGGTG GGTACCCCGG TCGACGCGAC GCCGGCGGTG
GTGCGCCACG CCCTCGCCGG TGCCGCGGAC TCCCCGGGGT ACCCGCTCAC CACAGGCACG
CCCGATCTTC GTGAGGCGGC TGCCGGCTGG CTGGCCCGCC GGCTCGGTGT GCTGGTGGAG
CCGTCCGCCG TGCTGCCGGT GCTGGGCACG AAGGAGCTGG TCGCCCAGCT TCCCTCGCAG
CTCGGCCTGG AGCCCGGGGA CCGCGTCTGG GTGCCCACCC CGGCCTACCC GACCTACGAG
GTCGGCGCCC TGCTCGCGCG CTGCGAGCCG GTCGTCGGCC CCGCCGAGGG TGTTGCCCTC
GTCTGGCTGA ACTCGCCCGG CAACCCGACG GGGCGTGTCC TGTCGGTGGA CGAGATGCGC
GCAGTGGTCA CCTGGGCGCG TGAGCGCGGC GTGATCGTCG CCAGCGACGA GTGCTACATC
GAGCTGGGCT GGGAGGCCCG CGCGGTCTCG GTGCTCCACC CGGACGTCTG CGGCGGCTCC
CACGAGGGCC TGCTCGCCGT CCACTCGTTG TCCAAGCGCT CGAACCTGGC CGGGTACCGG
GCCGGGTTCG TCACCGGTGA CCCCGATCTC GTCGACGGGC TGCTCCAGCT CCGCAAGCAC
GCGGGGCTGA TGATGCCGTC GCCGGTGCAG GCGGCGACGA CGGCCGCGCT CGCGGACGAC
ATGCACGTCG CCGACCAGCG CGCCCGCTAC GCCAACCGGC GGGCGGTACT CGCCGCGGCG
CTCGCCGTCG CGGGCTTCAC GATCGACCAC AGCGAGGCCG GTCTCTATTT GTGGGCCACC
CGCGGCGAGG ACTGCTGGGC CACGGTGGAC GCGCTGTCCA GCGTGGGTGT CCTGGTCGCG
CCGGGGAGCT TCTACGGCGA GTCCGGCCGG CGGCACGTGC GGGTCGCGCT GACCGCCCCG
GACGCCCAGA TCGCCACCGT TCCGGAGCGC ATGACCATGC TCCCCGCGGC AGGCGCCCCG
AGCGGCGCGC AGGCCGCGCC GGGCTGGGGC CAGCAGCCGG CCGGCTACCC GCCCGCCGGG
CCGCCCGGCC CCGCGGCTTC GGGGCCGCAT CCGGTGGGTG CGGGCCGCGG CGGTGACCAG
GGCTGGTCCT CCGGCCGTCC GTCCGGGTAC GGAGCGGGTG AGCCGGCGCG GGCCGACCAG
AGCTCTGTCG GTTCGTTCGA CCGGTACCGG GCGAGCCAGC CCGATCCGGG CGCCCGGCCG
TCCCAGGACT ACCGCCCCAC CCAGGACTTC GGCTCGGCCC AGGAATACCG CCAGCCTGAG
GAATACCGGC AGTCCCAGGA CTTCCGGGGA GGCCGGGACA TCCGCTCGGG GCAGCCCGGA
GATCCCTACC GGGACCCCCA GGGTGCCCAC GGCCGGTCGG GGTCGTACTC CGGCGCCGGT
GAGGGCGCCG CCGGGCAGGG CACGCCACCG CCGTACCAGA CGGGTCAGCT GCCCGTCCCC
TCGTATGAGA ACGGCGGCGG CAGCGCGCCG CAGCAGCAAC CGCCGCTGCC TTACCAGACC
GGGCAGATGG CCGTGCCTCC GTACCAGACG GGCCAGCTGC CGGTGCCGCC GTATGAGACC
GGCCAGCTGC CGGTGCCGCC GTATGAGACC GGCCAGCTGC CGGTGCCGCC GTATGAGACC
GGCCAGCTGC CGGTCCCGCC GTACCAGACC GGGCAGATGG CCGTCCCGCG GCCCGGTGGT
GGCGAGCAGG GAGACCGGAA CACGCCGGGC TGGGGCTCGG AGCCCGACGT CCGCTGA
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| Protein sequence | MRLPDFPWDH LVSYKEKARS HPYGLVDLSV GTPVDATPAV VRHALAGAAD SPGYPLTTGT
PDLREAAAGW LARRLGVLVE PSAVLPVLGT KELVAQLPSQ LGLEPGDRVW VPTPAYPTYE
VGALLARCEP VVGPAEGVAL VWLNSPGNPT GRVLSVDEMR AVVTWARERG VIVASDECYI
ELGWEARAVS VLHPDVCGGS HEGLLAVHSL SKRSNLAGYR AGFVTGDPDL VDGLLQLRKH
AGLMMPSPVQ AATTAALADD MHVADQRARY ANRRAVLAAA LAVAGFTIDH SEAGLYLWAT
RGEDCWATVD ALSSVGVLVA PGSFYGESGR RHVRVALTAP DAQIATVPER MTMLPAAGAP
SGAQAAPGWG QQPAGYPPAG PPGPAASGPH PVGAGRGGDQ GWSSGRPSGY GAGEPARADQ
SSVGSFDRYR ASQPDPGARP SQDYRPTQDF GSAQEYRQPE EYRQSQDFRG GRDIRSGQPG
DPYRDPQGAH GRSGSYSGAG EGAAGQGTPP PYQTGQLPVP SYENGGGSAP QQQPPLPYQT
GQMAVPPYQT GQLPVPPYET GQLPVPPYET GQLPVPPYET GQLPVPPYQT GQMAVPRPGG
GEQGDRNTPG WGSEPDVR
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