| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0529 |
|---|
| Symbol | |
|---|
| ID | 5668947 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 615599 |
|---|
| End bp | 618124 |
|---|
| Gene Length | 2526 bp |
|---|
| Protein Length | 841 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 641239457 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001504895 |
|---|
| Protein GI | 158312387 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.628545 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGGC TGGTCTGGCA CACCGTCCGC GCCCGCAAGG GCAGCCTGGT GGGCACATTC
GTCGCGCTGA CGCTCGGCGT GGCGCTGCTG GCCGCGATGG CGCTGACCCT CGTGAGCAGC
GTCGGGGGCG GCGGGGGCCG CCCGACCTGG TACGTCGATG CCGACGTGGT CGTGGCGGGT
GGCGGCATTG TCAGTGTCAC CACCGGTTCA GGCGAGGACC GGGAGACGGC CTCGCTGCGT
ACCGCCACCG CGCGCGGGCT GCCGAGCGGC CTGCGCGACC GTCTGGCCGG CCTGGACGCT
TCCCTGGTGC TGGACTTCGC GGCGTACGCG ACGGCGCCCG GCGCGCCCGG TGACACCGTC
CGCCCGTGGT CGGCCGCCGC CCTGCACGCC TACGGGTGGG TCGCGGGCGG GCCGCCCCGT
GGTGCTCGGG ACGTCGTGCT CAGCGCCCCG ACTGCCCACC GTCCCGGAGC CGAGATCACC
GTCGTCACCG GGCGCGGCGT GGAGCGCTTC GTGGTCAGCG GTGTGCTGCG CACCGACGCC
CCGGCGGCGC TGTACACCGC CGACGCCGTT GCCGAGGAGC TCGCCGACGG CCGCGTCGCG
GCGGTCGCGC TGAACGCGCC GGGCGCCGGC CCAGCCGGCG CCAGCACGCC CGCCGTCATG
TCGTTGGCCG ACGCCGCCCG CGCCGTCGTC GGCGACACCG CGCTCGAGGA CGGCTCCGTT
CAGGTGCTCA CCGGCGACGA CCGGCGCCGA GCCGAGCCGG ACCCCGACGC CGAGCGGCGG
ACGGAGGCGG TCGCCCTGCT CGCCGCCACC ACGGGGCTCG CCGGCTTCGT GTCGATCTTC
GTGGTCTCCG GGACGTTCGC CTACGCCGTG ACGGCCCGGC GCCGTGAGTT CGGCCTGTTG
CGGGCCGCCG GCGCCACGCC CCGCCAGGTC TTTCGGATCG TGCTCGGCGA GGCCCTCACC
GTCGGTGTGC TCGCCTCGCT GGCCGGCGGT GCCCTGGGAG CCGCGATCGC CCCGGACTTC
GCCGCGCGCC TGGCCCGCAC CGGGTTCGTG CCCAGCGACT TCACCGCCCG GTTCGTCTTC
TGGCCGGTGG CCGCCGCGTT CGGGACCGGG CTGGGCGTGG CCCTGCTCGG TGCCTGGGTG
GCGGCGCGGC GAGCGGGGCG GGTGCGCCCG GTCGAGGCGC TGCGCGACGC GGCGGTGGAC
CGTCGGCCGA TGACGACGGC GCGCGCGCTG GCCGGCCTGC TCGCTCTCGG CTGCTGCGTG
CCGCTGGTCG CGGTGCTGGT GGCGAACCCG AGCGCGGACG CCGTCGCGCT CATCATGATC
ACGGCGCTGT TCCTGATCGT CGCCTGCGCG ATGTTCGCTC CGCTCGTGGT GCCGCCGCTG
GTGTCGCTGC TCAGTGCCCC GCTGTCGGGG TCGTCGGGGG CGGTGGGCCT GCTCGCCGGC
CATGGCGCGC GGGCGGCCGT ACTGCGCACC GCGGCGACCG CGGCGCCGAT CCTGGTGACC
GTCGGGATTG CCGGCTCCAC CCTGACCGGG CTCGGCACCC TGCAGGCGGC GACGCAGAAC
GCGGCACGGG AGCGGATCAC GGCCGAGGCA CTCACCATGC CCGTCACCGG GAAGGGGCTG
CCCGACGCGA GCGTCGCCGC CCTGCGCGAG GTCCCCGGGG TGAGTGCCGC CGTTCCCGTC
ACCGAGAGCC GGGTCTACGT TCGGGACGGC GACGAGCCGG AGGGCTGGAC CGGCTACTAC
GCGTCGGGCG CGGACCTCGC CGCCGTACTC GACGTCCCCC TGGTCGCGGG ATCGCTGGCC
GACCTCGCCG GCACCGACAC GGTCGCCGTT CCGGAGGGTC GCTGGGAGCT CGGCGAGACG
GCCGAGCTGT GGCTCGGTGA CTCGACGCCG GCACGGCTGC GGGTGGTGGC CGTCTTCGAG
AGGCAGCTCG ACCTCTCGGA GACCGTCCTG CTGCCGTCGC GGCTGCGCGA CCGCCACGCC
CTCCCGGGGG CCGACGTCGT CTACCTGCGG CTGGCACCGG ACGCGTCGTT GGAACAGGTA
CGCGCGGCTG CCGCCGCCGG TGCCGGAACG GTGGTCGACA CCGGGAGCTA CCTCTCGGCG
GCGGGCGAGG AGGAGGCACG GGTGAACCGG CAGGCGTCGG TCGCCATGCT CGGCCTGTCG
CTCGTCTACA CCGGCATCGC GATCGCCAAC ACCCTCGTGA TGGCGACCCG GGACCGCGCA
CGGGAGTTCG CGACCATCCG GCTCGCCGGT GCCACCCGCC GTCAGGTGCT GTGGGTGGTC
GGCACCGAGG CGGTGCTGGT GACCTGCATC GGGGTGCTGC TGGCCGCGGT CGTCACGGCG
GTCACGGCAC TCGGTGCCCG CCACGGCCTG GCCGACATCG CGCCGTCCGT GCCGCTGGCC
GTGCCCTGGG CTCCGCTCGC CGGGATCGTC CTGGCCTGCC TGGTCACGGC CGTGCTGGCC
AGCGTGATCC CGGCCGCGCT GCTGCTGCGT CGCCGCCCCG CCGAGCTGGC CGGCGTCCGC
GAGTAG
|
|---|
| Protein sequence | MIRLVWHTVR ARKGSLVGTF VALTLGVALL AAMALTLVSS VGGGGGRPTW YVDADVVVAG
GGIVSVTTGS GEDRETASLR TATARGLPSG LRDRLAGLDA SLVLDFAAYA TAPGAPGDTV
RPWSAAALHA YGWVAGGPPR GARDVVLSAP TAHRPGAEIT VVTGRGVERF VVSGVLRTDA
PAALYTADAV AEELADGRVA AVALNAPGAG PAGASTPAVM SLADAARAVV GDTALEDGSV
QVLTGDDRRR AEPDPDAERR TEAVALLAAT TGLAGFVSIF VVSGTFAYAV TARRREFGLL
RAAGATPRQV FRIVLGEALT VGVLASLAGG ALGAAIAPDF AARLARTGFV PSDFTARFVF
WPVAAAFGTG LGVALLGAWV AARRAGRVRP VEALRDAAVD RRPMTTARAL AGLLALGCCV
PLVAVLVANP SADAVALIMI TALFLIVACA MFAPLVVPPL VSLLSAPLSG SSGAVGLLAG
HGARAAVLRT AATAAPILVT VGIAGSTLTG LGTLQAATQN AARERITAEA LTMPVTGKGL
PDASVAALRE VPGVSAAVPV TESRVYVRDG DEPEGWTGYY ASGADLAAVL DVPLVAGSLA
DLAGTDTVAV PEGRWELGET AELWLGDSTP ARLRVVAVFE RQLDLSETVL LPSRLRDRHA
LPGADVVYLR LAPDASLEQV RAAAAAGAGT VVDTGSYLSA AGEEEARVNR QASVAMLGLS
LVYTGIAIAN TLVMATRDRA REFATIRLAG ATRRQVLWVV GTEAVLVTCI GVLLAAVVTA
VTALGARHGL ADIAPSVPLA VPWAPLAGIV LACLVTAVLA SVIPAALLLR RRPAELAGVR
E
|
|---|
| |