| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0246 |
|---|
| Symbol | |
|---|
| ID | 5668671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 300704 |
|---|
| End bp | 301759 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641239176 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001504619 |
|---|
| Protein GI | 158312111 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.153805 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.728482 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCGC AGGCGACACC ACCCGCGACG GCCCGCACGC CGGCCGCGGC GGCCCGCACG
CCCTGGGCTC CCGACAGGAG CGCCCTTCGC GGGCGCGTGG CCGTCGTCGC CGGCGCCACC
CGCGGCGCGG GTCGCGGGAT CGCGGCGGCG CTCGGTGAGG CCGGCGCCAC CGTCATCTGC
ACCGGCCGCA GCAGCAGGAC GGGCGTCCTG CGCTCCGACT ACGACCGCGC CGAGACGATC
GAGGAGACCG CGGAGCTCGT CACCAAGCTC GGTGGTGCCG GCATCGCCGT CCCCGTCGAC
CATCTGGACC CGGAGCAGGT GCGACGACTG GCCGACCGCG TCCGCGCCGA GCACGGGCAC
CTCGACGTGC TCGTCAACGA CATCTGGGGC GGCGAGGTCC TCAAGGGCGG GCCGAGCGAG
TGGGACACGC CGGTCTGGGA GCACGACCTC GACCGCGGGA TGCGCATCCT GCGGCTCGCC
GTGGACACCC ACCTGATCAC CTCCCACCAC CTGCTCCCGC TGCTGATCGA CCGCCCAGGC
GGGCTGGTCG TCGAGGTGAC CGACGGGACG ACGGACTACA ACGCGGCCAA CTACCGGATC
TCCGTGTACT ACGACCTCGC CAAGGTCGCC GTGAACCGGC TCGCCTTCTC ACAGGGCCAC
GAGATCGCCT CGCACGGCGG GACCGCCGTC GCCGTCACGC CCGGCTGGCT GCGCTCGGAG
ATGATGCTCG AGGCGTTCGG CGTCACCGAG GAGACCTGGC GCGACGCCCT CACCCCGCCC
GACAGCGCCT CGCCCAGCGG TGCTCCGCCC AGCGGTGCTC CGCCGGACTT CGCGTTCTCC
GAGTCGCCGC GTTATGTCGG GCGCGCCGTC GCCGCGCTGG CCGCCGATCC GGGACGGGCC
CGCTGGAACC AGCGCTCGGT GACCTCCGGC CGGCTCGCGG CCGAGTACGG CTTCACCGAC
GTCGACGGGT CACAACCGGA CATCTGGCCG CGCCTGGAAC GTCCGGCGGA GGCCCCGGCG
CCGGCGGCCG GTCAGGAGCC GCACCCGCGC CGGTAG
|
|---|
| Protein sequence | MSAQATPPAT ARTPAAAART PWAPDRSALR GRVAVVAGAT RGAGRGIAAA LGEAGATVIC
TGRSSRTGVL RSDYDRAETI EETAELVTKL GGAGIAVPVD HLDPEQVRRL ADRVRAEHGH
LDVLVNDIWG GEVLKGGPSE WDTPVWEHDL DRGMRILRLA VDTHLITSHH LLPLLIDRPG
GLVVEVTDGT TDYNAANYRI SVYYDLAKVA VNRLAFSQGH EIASHGGTAV AVTPGWLRSE
MMLEAFGVTE ETWRDALTPP DSASPSGAPP SGAPPDFAFS ESPRYVGRAV AALAADPGRA
RWNQRSVTSG RLAAEYGFTD VDGSQPDIWP RLERPAEAPA PAAGQEPHPR R
|
|---|
| |