| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0223 |
|---|
| Symbol | |
|---|
| ID | 5668648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 271810 |
|---|
| End bp | 273219 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641239152 |
|---|
| Product | membrane-flanked domain-containing protein |
|---|
| Protein accession | YP_001504596 |
|---|
| Protein GI | 158312088 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3428] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.346085 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAGAG CCGAGCCGGA GCCGTCGGTC GAGGACGCGG CTCCGCCGCT CCAGCCGCCG
CCCGCCGGCG CGGAGCCGGA CGACGGCTAC CACCATCTTC ATCCGCTCAC GCCACTGCTG
CGCGGTTGGC TGCTGGTGGC GGCGGTCGCC GTCAGTATTC TGAAGAACTT CGCCGAGGAA
CTGACGGTTC GCAGTGTCAC GCTCACCCTC TCCGCGCTGC TGCCCGCGGC CTCGGCATAC
GGCTACTGCG CCTGGCGGTT CACCCGTTAC CGCGTGGAAG CCGAGGATCT GCGGCTGGAG
ACCGGCCTGC TGATCAAGCG TATCCGGCAT GTGCGGCTCG ACCGCATCCA GTCGGTGGAC
GTCGCCCAGC CGCTGATCGC CCGGGCGGCC GGGCTCGCCG TGCTGCGGCT GGACCTCGCC
GGCACGCACG ACGGGGACGC GGAGGAATCC GGCACGAGGC TCAGCTACCT CTCGCTCGAA
CGCGCGAGGC TGCTGCGGGC GGAGCTGCTC GCCCGCGCAG CCGGCGTGGC GCCCGGAGCC
GGAGAGGCAC CCGAACGCCC GCTCGCGTAC GTTCCGCCGC TGCGCCTGGC AGCCGCGATC
ACGCTCTCCC CCGCACCGTG GCTGGCACTC GGCGCGGCCT TCATCCTGGT CACCCCGGCC
CTGCTCACCG GCACCTTCGC CGGGTTCATC GCGGTCGCGC CCGCGCTGGT CGGAGTGTGG
CGGACGACCT TCGACCGCTT CGCGACCGGC TTCCGGTTCA CGGTGTCGGA ATCGCCGGAC
GGCCTGCGTA TCCGCGGCGG CCTGCTCGAC CGTGCCCATC ACACCGTGCC GCACGGCCGG
GTCCAGGCGG TGAGCCTGCG CGGCTCGCCG CTGTGGCGCT GGCTCGGCTG GGTGGAGCTC
CAGATCAACG TCGCCGGCGA CGCCCGGAGC ATGCTGCTGC CCGTCGCCCC CCGCGGGCAG
GCCGTGAACG TGATCGAACG GCTGCTGCCG GCCGTGGACG TCGACGGCAT GGCGCTGCCG
CGCCCGCCGG GCCGGGCCCG GCTGATCGCG CCGGTCCGGT GGCGCCGGAT GCGCTGCGGC
GCGGACGACC GGGTGTTCGT CGTCCGCGGC GGAGTGCTGT GGCAGCGCAC CGACATCATT
CCGCACGGCA AGGTGCAGAG CATCCGGGTC GTGCAGCACC CGGCCCATCG CCTGCTGCGC
CTCGCGGATG TCCACCTCGA CTGCGCGGGC GGCCCCGTGC GGATCCACGC CCGGCTGCTG
GACGTCCGCC AGGCGCACGC GATCGCGGCC GCGCAGGCCG AGCGCTCCCG GCTCAGCCGG
GTCGCCGCCG TACCGATCGT GACCGGCTCG CCGGCCTGGA CGCCGCTGCG CCCTCTGTCC
GGGGCACGCG ACCCCGACGC GGTGCACTGA
|
|---|
| Protein sequence | MTRAEPEPSV EDAAPPLQPP PAGAEPDDGY HHLHPLTPLL RGWLLVAAVA VSILKNFAEE
LTVRSVTLTL SALLPAASAY GYCAWRFTRY RVEAEDLRLE TGLLIKRIRH VRLDRIQSVD
VAQPLIARAA GLAVLRLDLA GTHDGDAEES GTRLSYLSLE RARLLRAELL ARAAGVAPGA
GEAPERPLAY VPPLRLAAAI TLSPAPWLAL GAAFILVTPA LLTGTFAGFI AVAPALVGVW
RTTFDRFATG FRFTVSESPD GLRIRGGLLD RAHHTVPHGR VQAVSLRGSP LWRWLGWVEL
QINVAGDARS MLLPVAPRGQ AVNVIERLLP AVDVDGMALP RPPGRARLIA PVRWRRMRCG
ADDRVFVVRG GVLWQRTDII PHGKVQSIRV VQHPAHRLLR LADVHLDCAG GPVRIHARLL
DVRQAHAIAA AQAERSRLSR VAAVPIVTGS PAWTPLRPLS GARDPDAVH
|
|---|
| |