| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3960 |
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| Symbol | |
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| ID | 5664344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 4814948 |
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| End bp | 4816369 |
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| Gene Length | 1422 bp |
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| Protein Length | 473 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641238624 |
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| Product | Sel1 domain-containing protein |
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| Protein accession | YP_001503805 |
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| Protein GI | 157963771 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTGAACG ATATTGAGTT CGTCAATCTG TTCTCAGCTG AATTAGGTGA GGATTATCGC
AAGGCCAAAA GTTATGTAAA AGATGTACCG ACTCAGGCAC TGCTACATGT ACGCAGTTTT
AGTCATAAGC TCACGAGTTT GCTGGCTGAG CCTAAGAAGA TCCGTTTCGA AAGCCCTAAC
CTATATGACC GAATCGAGCA GCTTAATCAG CATCGACTCA TCAACGTTAA AACCACCCGC
GCACTACACA AGCTCAGAGC CGACGGTAAC CGTGGCGCTC ATCCTGAAAA GTATCACCTC
ACCCCCGAGC AGCTACAGCA GTTAAGTGAG CGTTCGATTA AACAGCTTTT ATCTTTGGTG
GAGTCGCTGT TTGTTAGTGT GAGCAAGCAA GATAAGCCTG AATATTACTT TGAAGATTTT
GACTCGTTAG CGGGGCGAGA CCTGTGCTAT CGCGCCGTCA TGGATCGCGA CCCCGAGTCG
CAGTATTTGG TGGGGATGTC ATTAAAAACC CGAGCTCTGA TGCAGCGTGA GCAGGAACAC
GCACTGCAGG GCAGTGGTGA TGAGGCGGTA GAAGAGCGCT CGACGGCTTC ATTGAAGCAG
GCCAGCTATT GGTTTGCTCA GGCATCGATC AAAGATCTAA ACGCTTTGTT CGAGCACGGG
GTATCTTTGA TCCACGGTTA CAGCGGAGAG ACCGACGTAA TCGCAGGAGA GCTTGCAATT
GCTAAGGCTG CCGAAGCGGG CATTGCTAAT GCGATGGCGC TATTAGGTTA TTTCTATCTG
GTGGGCAGTG AGCAGTTTGA AGCTGACTCG AGTTTGGCGC AGCAATACCT CAGCGAAGCG
GCTAAGTTAG AGCAATCGGA GGCAATGGCT AATTTAGGGG TGCTCTATTA CCAGCAGGGT
GAGCTAGAAA GCGCCTATAA GTATATTCAT CGAGCGGCTC AGGCTGGATT CCCTCACGCT
CAATATCATT TAGCCTTGAT GCTGGCACGT GGCGAAGGCT GTGAGCAAGA CAGCATTAAG
AGTGCTTATT GGATGGCTGA GGCCGCTGAG CAGGGGCAGG TGGATGCTAT GTTTTCCTGT
GCGCAGGGGA TGCTGCATGA TGACAGCGCC ATTGGGCAAG ACTTGTCACA AGCAGAAGCC
TATCTGCGAG AGGTGATTAA GTATGGTCAT AGCGTACCGG CAATGATTGA ACTCAGTATT
GCACTCGCCG ATGGCATCTT AGGGCGCATC GATGTGGTGT CTGCCGCAGC GTTACTTAAA
ATGGCGAGAG AGCGAGCCAA TCAAACTGAG CTGGATGTGA TTTTGCCGCT ATGGAGTTCA
TTGGCGCAGC AAGTTGATGC CGTTTTAGCC GTTACCAATT CAAAACAAGA GCTTTTATCA
TTAAACAAAG CGGCAGAGTT GTTATCTGAG CCCGAAGATT AA
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| Protein sequence | MLNDIEFVNL FSAELGEDYR KAKSYVKDVP TQALLHVRSF SHKLTSLLAE PKKIRFESPN
LYDRIEQLNQ HRLINVKTTR ALHKLRADGN RGAHPEKYHL TPEQLQQLSE RSIKQLLSLV
ESLFVSVSKQ DKPEYYFEDF DSLAGRDLCY RAVMDRDPES QYLVGMSLKT RALMQREQEH
ALQGSGDEAV EERSTASLKQ ASYWFAQASI KDLNALFEHG VSLIHGYSGE TDVIAGELAI
AKAAEAGIAN AMALLGYFYL VGSEQFEADS SLAQQYLSEA AKLEQSEAMA NLGVLYYQQG
ELESAYKYIH RAAQAGFPHA QYHLALMLAR GEGCEQDSIK SAYWMAEAAE QGQVDAMFSC
AQGMLHDDSA IGQDLSQAEA YLREVIKYGH SVPAMIELSI ALADGILGRI DVVSAAALLK
MARERANQTE LDVILPLWSS LAQQVDAVLA VTNSKQELLS LNKAAELLSE PED
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