Gene Spea_3954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3954 
Symbol 
ID5664338 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand- 
Start bp4808529 
End bp4809200 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content47% 
IMG OID641238618 
ProductDTW domain-containing protein 
Protein accessionYP_001503799 
Protein GI157963765 
COG category[S] Function unknown 
COG ID[COG3148] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGAGTT ATCGTGTAAT TTGTATCAAC ACTCGGCTAC AATTTGCAGG CTATTTTAAA 
CAATTACCCA GAGGTCTCGT GTCCCGTCCA ACTTGTCCCA ACTGCCACTA TCCGCAAAAT 
GCCTGTTTGT GTGCCAGTAT CGAACTTATG CAAGTCACGC CTGAGCTGAT AATTTTGCAA 
GATCCCAGTG AAGTAGGGCA TGCGAAGAAT AGTGTGCGCC TGCTAGAGCT GGTTATCGCT 
GAAACTCAAG TCGTCGTCGG TGAAACAGCC GATGATTTTG CTGCGCTGCG TCAACAATTG 
GCTGCATCCG ATAAGCCTGT CTACTTAGTT TACCCATCAG AGAACAGCAT ATCGGCAAAT 
GAGACTAAGG TTGAAGAGGA AGTGATCCTT CTCTTCTTAG ATGGCACTTG GAGAAAGGCC 
TATAAATTGC TGCAGCTTAA CCCATGGTTA CAGGCTTATC CTGCCTTGCA CTTGGATTTG 
GACAGTGCTT CAAATTACAC CATACGTAAG GCGAGCCGAA GCGATAGTCT GTCCACATTA 
GAGGCCGCGG CCATGATGTT AAAAGCCATA GATAACGAGC AAGATGTCGC GCCGCTAACT 
AAGGCATTAG ATGCCATGGT AGAGCAAAGG TTAGCTTCTA TGCCTGCCGA TGTGCGGGCT 
AGATATCAAT AA
 
Protein sequence
MSSYRVICIN TRLQFAGYFK QLPRGLVSRP TCPNCHYPQN ACLCASIELM QVTPELIILQ 
DPSEVGHAKN SVRLLELVIA ETQVVVGETA DDFAALRQQL AASDKPVYLV YPSENSISAN 
ETKVEEEVIL LFLDGTWRKA YKLLQLNPWL QAYPALHLDL DSASNYTIRK ASRSDSLSTL 
EAAAMMLKAI DNEQDVAPLT KALDAMVEQR LASMPADVRA RYQ