| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3444 |
|---|
| Symbol | |
|---|
| ID | 5663830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 4209369 |
|---|
| End bp | 4210919 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641238100 |
|---|
| Product | anaerobic nitric oxide reductase transcription regulator |
|---|
| Protein accession | YP_001503292 |
|---|
| Protein GI | 157963258 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTGA GTCAAAGCGA CCTTACCCGT ATTGCACTGG ATATCACTTC AGGCTTGTCC
GACCATGACA GATTCTCAAG GCTACTCGAT ACAGTGAGGC AAACTCTGCA CTGTGACGCC
GCCGCGCTGC TGCAATTTAC TGGGCGACAA TTTACGCCGC TGGCGATCGA TGGTTTGAGC
CCCGACGTGC TAGGCAGGCG CTTTATCTTA AGCGAGCATC CAAGGCTCGA GGCCATTGCT
CGTGCTGGCG ATGTGGTGAG ATTTCCTGCC GACAGTGAAC TACCCGACCC TTATGATGGT
TTAATCCCTC ATCAAGAAGA TCATTTGATG GTGCATGCCT GTATTGGTCT GCCTTTAGTC
GCTGACGGCG CGCTTATCGG CGCGGTCACT ATCGATGGTT TCGACCCTGA GCAGTTCAAC
GATTTTAGCG ATAAAGAGCT ACGCACCTTA AGTGCTATCG CTTCGGCATC ACTGAATAAC
GCCCTGCTTA TTGAGAAGCT AGAAAAACAG GCGCTGCAGT CGCAAGAGCC ATCATCATTT
AATCACAGCA GCGACAGTGA AGTTGAAATG ATTGGCCAAT CACCTGCCAT GCTAGCGATG
AAAAATGAGC TTAAGGTAGT GGCCAGCACC GATCTTAACG TGTTGATTTT AGGTGATACA
GGTACCGGTA AGGAGCTAGT CGCTAAATCC ATCCACCAAG GTTCTCCCCG TTCAAGCAAG
TCTCTGGTTT ATCTTAACTG CGCAGCATTA CCAGAATCTG TCGCCGAAAG TGAGCTGTTC
GGTCATGTAA AAGGGGCCTT TACTGGCGCT ATCAGCCACC GTAGTGGTAA GTTTGAAATC
GCCGATAAGG GCACACTATT TTTAGATGAA ATAGGCGAGT TACCGCTGTC ATTACAGTCT
AAATTGCTGC GAGTATTACA GTATGGCGAC TTGCAAAAAG TCGGCTCAGA TAAAAGCCTA
AAAGTGGATG TGCGGATCAT TGCCGCTACC AATAAAGATC TCAAACAAGA AGTGTTAGCG
GGTCGTTTTA GAGCCGACCT TTACCACAGA CTCAGTGTAT TTCCCGTTAT AGTGCCGCCT
CTAAAAGAGC GCGAAGGTGA CATTATTTTA CTGAGCGGTT TCTTCGTCGA GCGCAGCAGA
GGGAAATTGG GTCTAAAGAG CCTTAGACTC AGCCCAGATA GCATAAAATT GCTAAACAGT
TACGACTGGC CCGGTAATGT GCGAGAACTC GAACATGTAT TGCACCGCGC CGCGGTGTTA
GCTCGCGCCC AAGCCCAATC TAACATTGCA CTGATCACGC CGCAGCACTT TGATTTTTAT
AATCAACAAG CAAAAAATAT CGCAGCAGTG CCCCCTAGTA TCGGCTCTAA ATCAGTCTTA
CAGTCAACAA AGACTGAGCA AACTCTTAAG CTGGCAACCG AAGCATTTCA GGCGCAATAT
ATTCGCCAAG CATTAGCTGC CAACGGCCAT AACTGGGCGG CAACCGCAAG GGCACTCGAT
GTCGACTCGG GCAACCTACA CCGCCTAGCA AAGCGCATCG GCATAAAATA A
|
|---|
| Protein sequence | MALSQSDLTR IALDITSGLS DHDRFSRLLD TVRQTLHCDA AALLQFTGRQ FTPLAIDGLS
PDVLGRRFIL SEHPRLEAIA RAGDVVRFPA DSELPDPYDG LIPHQEDHLM VHACIGLPLV
ADGALIGAVT IDGFDPEQFN DFSDKELRTL SAIASASLNN ALLIEKLEKQ ALQSQEPSSF
NHSSDSEVEM IGQSPAMLAM KNELKVVAST DLNVLILGDT GTGKELVAKS IHQGSPRSSK
SLVYLNCAAL PESVAESELF GHVKGAFTGA ISHRSGKFEI ADKGTLFLDE IGELPLSLQS
KLLRVLQYGD LQKVGSDKSL KVDVRIIAAT NKDLKQEVLA GRFRADLYHR LSVFPVIVPP
LKEREGDIIL LSGFFVERSR GKLGLKSLRL SPDSIKLLNS YDWPGNVREL EHVLHRAAVL
ARAQAQSNIA LITPQHFDFY NQQAKNIAAV PPSIGSKSVL QSTKTEQTLK LATEAFQAQY
IRQALAANGH NWAATARALD VDSGNLHRLA KRIGIK
|
|---|
| |