| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3429 |
|---|
| Symbol | |
|---|
| ID | 5663815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 4191223 |
|---|
| End bp | 4192170 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641238085 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001503277 |
|---|
| Protein GI | 157963243 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000037379 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAGTTGA GGCATTTAAA GCACTTTTTA GTTCTAGCAA AGCTTAAACA TTTTAATCGT
GCTGCAGTGC AGCTTAACTT GGCTCAACCT TCATTGTCTC GCAGCATTCA AAAGATGGAA
GAGCGCCTAG GTGTTAAATT ATTGGAGCGT AACTCCAAAT CAGTTTCGTT AACTGAGTTT
GGGGAGCTGG TGGTAAGGCA GGGGCAAAAA ATTATCGATG ATGTGGATCT CTTGTACAGA
GATATTCGTT CACTCAATGG CCTTGATGCA GGTGACATCT TGATTGGTTC AAGTCCGATT
CCCTCAAATG CATTGCTAGG AGCGGCTATT GGAAACTTTA TTCGACTCTA TCCACATATT
AACGTTGAAT TAATTGTTGA GTCACCCGCA GAGCTCTATG AACGCTTAAT CGGTGGTGGA
TTATCTATGT TTGTTGCTGA GACTAAAGCA ACTGATTTTG ATAAGCGAGA TGAGCTCGCG
ACCTTACCTT TACCCGAGTA CGATATTATT TTTTGTGTGA GGGCCGATCA TCCCCTGATG
ATGAGTAAAG TGTTAATGCT TGATGATTTA AGAGAATATC CTCTGGCCAT TCCTCGCGCC
ATGCCTTCAA GTGTACAGAC ACAGTTTGGT GATCTGTTTG ATAAAGATCG TCATGACTTT
GGTGGCTTAG TTAAGTTTGA TCAATTTTAT CCAATTAAAG AGTCACTTCT AAATTGCAAT
ATGGTGGCCA TTACGCCTGA GATCGCTGTG CGAAAAGAGC TAGCCGAGGG AAGGCTGGTG
AGTTTGCCTG TATCGGATAT GGTAAAGCTA ACAAGTTGCT TTAGCATTGT TTACCTTAAG
TCAAAAAGCC TAAGTCCTGT TACTACTGGT TTTATTGAAT TTCTATTGAA TTGTCATCCT
CAAAAAAACA TGCCAACTCG ACAGCAGTCG GAGCTCGTTA CCGTTTAA
|
|---|
| Protein sequence | MELRHLKHFL VLAKLKHFNR AAVQLNLAQP SLSRSIQKME ERLGVKLLER NSKSVSLTEF
GELVVRQGQK IIDDVDLLYR DIRSLNGLDA GDILIGSSPI PSNALLGAAI GNFIRLYPHI
NVELIVESPA ELYERLIGGG LSMFVAETKA TDFDKRDELA TLPLPEYDII FCVRADHPLM
MSKVLMLDDL REYPLAIPRA MPSSVQTQFG DLFDKDRHDF GGLVKFDQFY PIKESLLNCN
MVAITPEIAV RKELAEGRLV SLPVSDMVKL TSCFSIVYLK SKSLSPVTTG FIEFLLNCHP
QKNMPTRQQS ELVTV
|
|---|
| |