| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3213 |
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| Symbol | |
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| ID | 5663602 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 3938389 |
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| End bp | 3940557 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641237872 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001503064 |
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| Protein GI | 157963030 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG1301] Na+/H+-dicarboxylate symporters |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTAAAAA AAATTCTAAC TATGACTAGT TCGACCCAGA TGTTAGTGGC CATGTTTGTC
GGTTTCGCAG TAGGTCTATT TTTCGGCGAA TCAGTCGGCT GGATGGGTAC CATAGGCACC
AGCGTCATTT TGCTTATGCA GATGACAGTC CTACCCTATA TTGTGGTGTC GCTAGTTGGA
GGCATAGGAA AGCTGCAAAA GAGTACCGCC AAGCTTATCT TTAGCCGCGC AGGCCTTATC
ATGTTACTGC TGTGGCTACT GGCAATCGTC ATGATAGCCC TCATGCCACT GTCTTTTCCT
GTTGTTGAAT CGGCGTCGTT TTTCAGTACC AGCAGTATCG AACCTGTCAC CCCAATCGAT
TACTTTAAAC TGTATATTCC CTCGAATCCC TTCGAGTCCA TGGCCGATGG ATATGTTCCC
GCTATGGTGG TATTCAGTAT CGCCATGGGA CTGGCGCTAA TCGGCATGCA GGGCGAAAAT
AAACAGCAAA TTTTAACCTT TATGCATACT AGCTCAGAGA TCTTCTCGCG CATCACTCAG
GGCCTAGTCA AAGTGCTACC TATCGGTATT TTCGCCATGT CGGCTTCGGC AGCAGGCACC
ATGGGGGTCG ATGAGTTTGC CAGCATGCAG GTGTATCTGA TCAGCTATTT CGTGCTGTGC
TTATTGCTAA CCTTCTGGGT GCTGCCCTGG ATTGTGGCAT CGCTGACGCC AATTACTTTT
GCACAAGCGC TGCGAATTTC AAAGTCGAGC CTAGTCACAG CCTTCGCCAC AGGTAACATC
TTTATCGTGA TCCCTGTGAT TGTCGAAGAG TGTAAGCAGG TGATGCGTGA GCACGACAAC
TTATGTGATG ACGGCGCCAC CTTGATTGAA ATTTTGGTGC CTATCGCCTT CACCTTCCCC
AATATCGGCA AGCTCACAGT GATTATGTTT GTCTACTTTG CCGGTTGGTT TAACGGCACG
CCTGTAGATA TTGCCAGTAT TCCATCGCTG TCTATTAGTG GACTATTAGC CCTATTTGGC
AGCGTGTATG TGGCAATTCC CTTTATGCTG GATCTCGTCA AGCTCCCCGC AGATCTGTTC
CAGCTATTCG TGATGTCGGG CTTTATCACA GGTAAATTCA ACTCTATCGC CGCGGTGATG
AATCTGTTTG TACTCACCTT GCTGACCGCA TCACTGTTTC AAAAGTCACT CAAACTGCGT
CCACCACAAC TACTCAAGAT GGGCATAGGG ATCGGTGCCA GTGTATTGGC AACCTTGATT
GTTTGCCGTG TCGGCATGGG CATGTTCATT CACAGTCCAG AGATCACCAG CGGCGTGATA
GCCAATATGC AGGTGGCAGA CAAAGTGCCG ACCAAGGTGA ATAGGCAGTT CCCAGTCCTT
GGGAAAACAC CGACAACTCC GATCCGCGGC GTGCAGGCTA TCAGAGATAA GGGAACACTT
AGAGTCGGTT ACATCCCAAG TAATGTACCT TTTAGCTACT ATAACAATAG CGGGAACTTG
GTCGGCTTCG ATACTGCGAT GGCGACCAAA CTTGCCGAAG ACTTAAAGGT CAAAATCGAA
TTTATTCCCT TTAAGAAAGA CCAACTTGCT GCATCGTTAA AGGCGGGATT CTTCGATATT
GCCATGTCGG GGCTGGCCAT GGATATCGAG CAGATGGATG CCCTCAGTTA CGCTAATCCA
GTGCTTGAAT TAAACATTGC CATTGCAACG AGAGACCATC TGGTCAACGA GTTCAAGAGC
AATGAAAAGA TTAAAGAGAT GCGTAATATG ACTATAGCTT ATGTTGAGCA TAGTGATGTC
ATCGACGATG CCAAACATTT TGCTCCCCAT GTTAAGTTCG TCAAAATTGA AGGCTACAAA
GATTTCTTCA GACAGAAAAA TCACCAATAT GATGCGGTCG TGATCAGCGC TCAGGCAGGT
TCGGCTTGGA CTCTGTTCTT CCCCGGATAT GGCATTGCCT TGTTAGAAAA CAAATCTCGC
TACCCCGTGG CGTACGCTGT AGCACAAAAC AATCAGTCAC TACTCAATTA CATCAATAAC
TGGCAAAGGT TACGTAAGGT AGATGGCACT AAAGAGGCTA TCTATGATTA TTGGATGCTG
GGTAAAGGCG CCGAAAAAGT GCAGCCTCGC TGGTCGATAA TCCGAGATGT GTTGCACTGG
GTGGAATAA
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| Protein sequence | MLKKILTMTS STQMLVAMFV GFAVGLFFGE SVGWMGTIGT SVILLMQMTV LPYIVVSLVG
GIGKLQKSTA KLIFSRAGLI MLLLWLLAIV MIALMPLSFP VVESASFFST SSIEPVTPID
YFKLYIPSNP FESMADGYVP AMVVFSIAMG LALIGMQGEN KQQILTFMHT SSEIFSRITQ
GLVKVLPIGI FAMSASAAGT MGVDEFASMQ VYLISYFVLC LLLTFWVLPW IVASLTPITF
AQALRISKSS LVTAFATGNI FIVIPVIVEE CKQVMREHDN LCDDGATLIE ILVPIAFTFP
NIGKLTVIMF VYFAGWFNGT PVDIASIPSL SISGLLALFG SVYVAIPFML DLVKLPADLF
QLFVMSGFIT GKFNSIAAVM NLFVLTLLTA SLFQKSLKLR PPQLLKMGIG IGASVLATLI
VCRVGMGMFI HSPEITSGVI ANMQVADKVP TKVNRQFPVL GKTPTTPIRG VQAIRDKGTL
RVGYIPSNVP FSYYNNSGNL VGFDTAMATK LAEDLKVKIE FIPFKKDQLA ASLKAGFFDI
AMSGLAMDIE QMDALSYANP VLELNIAIAT RDHLVNEFKS NEKIKEMRNM TIAYVEHSDV
IDDAKHFAPH VKFVKIEGYK DFFRQKNHQY DAVVISAQAG SAWTLFFPGY GIALLENKSR
YPVAYAVAQN NQSLLNYINN WQRLRKVDGT KEAIYDYWML GKGAEKVQPR WSIIRDVLHW
VE
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