| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3193 |
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| Symbol | |
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| ID | 5663582 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 3915263 |
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| End bp | 3917146 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641237852 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001503044 |
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| Protein GI | 157963010 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTAAAC TTTCCCTGTT AATACAAATT CTGCTATTTG TAAGCACTCT TACGGTGTGC
AGTTTAGGCT TCGCCGAACA AACTAACATC CAAAAGGCAG ATAAAATTTT TGCCATTATC
GATAGTGGCA CCATTGACAA TCCCGAAGCC TATAACCTGC ATCTAACTCA ATTAGAAAGC
TTAATCTCAA AAGGGGATAC CTCAAGACAA CTGCGCCTAC AACGAGCCCT GTGTTGGTCA
TTCAACCCTT ATATAAAAGA GCAAATCCCA ACAGCTTTAG CATTTGCCAA ACACGTACTG
ACCAACCCTA AATTAGTAAA CTTTCCAGAC CATAAGCTCG ACTTGGAGCT GTGCCACACT
TGGTTTTCAG AGAAGCATGG CAACGTAGAA GCGGCGCTAA AAGGTTATAA CAAGATAATA
GAAGAGGCCT ATGCTCGAGA GAATTTACGC TTGGTGGCCG ATGCCAGAAA TATGCGTGGC
TTCTTACGAT CTTACCAAGG TAACTTTACT CAAGGACTCG AAGACTTACT GATAGCCCAT
GCTTTGTATC AAAATTTAAA CCTACCCGCT TGGGCTCATA GCAGCTTGTA TGAAATCGCC
ACCAGTTATC GCCGCCTAGG CGAACATAAA AATGCTATTC GTTACTTTAA ACAAGTTCAA
AACGGCCATA TTAACAAGCA AAACTTTGAT GGTGCCAATG CCATATCTGT CTCAATTGCC
ATTGCTGAAG AAGAACAAGG TAATCTCGAA GTCGCAAAGA CATTGTTTGA AGAGAGTCAT
GACTATTGGA GAAACAACAA AAAAGAGTTA GAGCAAGCTA CTGTTGCAGT GAATATCGCG
AGTACCTTGA TAAAACTCGG TGAGTTTACT CAAGCTCACC AATACCTAGA TGAAGCCGAG
CCGTTTATCC TGTCTACAGA TACCGCGTTT TACAGCTTTT TACATCTATT TCGCGCACAA
GCGTACCTTG CAGAGAGTCA ACTGTCTCAG GCTCACAAGA GTATTGCATA CGCCCGCAGC
GCTTTTAGCA GAGTGAAGAA CATACGCGGG TTGGCACAAT TGCAATTAGT CGAAAGCCAG
GCATTTCTCA AGCAAAAAGA TTGGAAACAA GCCTACTATG CACTCTCTGA ATATATGAAG
TTGCATATCG AACTCGATAG TAAGCAACTT TCAAGCTACA CCACAGAGAT GCGTACCCGC
TTCAATGCCG ATCAAATTGA ACAAGAAAAC CGTCATCTTA TAGAAAATCA GCAGCTCAGA
GAATTAGAGC TGGCCATGTT AGAACAAAAT GAACTACAGC AAGGGATCAT TATCTTTCTA
GGTGGCTTTA TCATCTTGAT TGTTTCGGTG TTTGCCTATA AACAAATTCA AAAGAACAAA
CTATTATCGG CACTTGCGCT AACGGATGAC CTCACCCAAC TTCCCAACCG ACGCTATATT
TATGCTAAGG CTCAGACCTA CTTCGAACAG GCTCAAAGGA CCGAGAGTCC ATTATCGGTG
ATCACCTTCG ATATCGACTA TTTCAAGCTA ATTAACGACA AGTTTGGTCA CGAAGTCGGC
GATCACGCCT TAAAGCTTCT GGCGGATACA TGCCGCGAAG TGCTCGCAAC ACAATATAAG
ACCGCCCGTA TTGGCGGCGA AGAGTTTTTA GTTATCTTGC CTGATACCGA TTTGGCACAG
GGTTATAAGA TAGCTCAGGC CTTGGTGCAT AGTGTCAGAT ACGGTGATTT TAGCCAACTA
CCATCAGGGT TTAGCATGAC TATCAGTGCC GGTGTCGCAA GCCTCAGCAC TGCGGACAGC
AAGTTGTCGC TGCTCCTCAA AAAAGCCGAC CAAGCCTTGT ACATAGCTAA AACAGAAGGT
CGCAACCAAG CTAGGATGGG TTAA
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| Protein sequence | MPKLSLLIQI LLFVSTLTVC SLGFAEQTNI QKADKIFAII DSGTIDNPEA YNLHLTQLES
LISKGDTSRQ LRLQRALCWS FNPYIKEQIP TALAFAKHVL TNPKLVNFPD HKLDLELCHT
WFSEKHGNVE AALKGYNKII EEAYARENLR LVADARNMRG FLRSYQGNFT QGLEDLLIAH
ALYQNLNLPA WAHSSLYEIA TSYRRLGEHK NAIRYFKQVQ NGHINKQNFD GANAISVSIA
IAEEEQGNLE VAKTLFEESH DYWRNNKKEL EQATVAVNIA STLIKLGEFT QAHQYLDEAE
PFILSTDTAF YSFLHLFRAQ AYLAESQLSQ AHKSIAYARS AFSRVKNIRG LAQLQLVESQ
AFLKQKDWKQ AYYALSEYMK LHIELDSKQL SSYTTEMRTR FNADQIEQEN RHLIENQQLR
ELELAMLEQN ELQQGIIIFL GGFIILIVSV FAYKQIQKNK LLSALALTDD LTQLPNRRYI
YAKAQTYFEQ AQRTESPLSV ITFDIDYFKL INDKFGHEVG DHALKLLADT CREVLATQYK
TARIGGEEFL VILPDTDLAQ GYKIAQALVH SVRYGDFSQL PSGFSMTISA GVASLSTADS
KLSLLLKKAD QALYIAKTEG RNQARMG
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