Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_3000 |
Symbol | |
ID | 5663390 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 3676168 |
End bp | 3677544 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641237639 |
Product | MATE efflux family protein |
Protein accession | YP_001502852 |
Protein GI | 157962818 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.649705 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCATGA GCCAACCTAT GCCACCGGCG GGAACTAATC GAGTCGCAAC CGACTCGCCA ATGATCACCG AGCCAATCGG AAAACTGTTT TGGCGCTATT CACTCCCTAC GATCCTCTCA ATGTTAGTGA CGGGAATATA CGTCACCATC GACGGCATGT TTATTGGGCA CTACCTCGGG GAAGTCGGCT TAGCGGGCAT GATTTTGGCT TACCCTATCG CTGCTGTGCT CTACGCGATT GGCGCAACGC TGGGAATGGG CGGCGCTGCT TTAGTGTCGA TTCATCTGGG GCAAGGTGAA ACTAGCATTG CTCGGCGCAT ATTGGGCAAT ACTTTTAGTC TGTGCCTTAT CTCGGGCCTT ATCACCACAG TACTCGGTTG CTACTTTTCT AGAGATATCT TGATGATGCT CGGCGCTGAA GGTGAGATCC TAAATAGCGC CGACGACTAT CTTTTTTGGT ATTTTGCCCT AGGCACTTTC CCCATAGTGT CGATGGCATT TACTGCATTG CTGCGTAATG ATGGTCGGCC CGGATTCGTG ACTTTCGTTT TGATCTTAGG TGGCGTGCTA AATACAGTGC TCGATTGGTT GTTAATCGTG GTGTTCCCTT ATGGGTTAAT GGGCGCAGCG ATAGCCACCA TGATTTCCCA AGCGGTGACG GGGGCCCTGT GTTTACAGCA TTTCTTCAGT AGTAAAACCG AGATAGGCAT CAACCTTGAG CAGATGAAGC TCAAATGGGA TCACTGCGCC AATATCATTC GTGTAGGTAC CCCAAGTTTC TTGATGAACA TGTACTTGAC CGTGGTGCTG ACGCTACACA ATGTGGCATT TCTTACGGTA GGCACGCCGC TGCATGTTGC TGCCTATGGG GTCGTGAGTT ATACCGAAGC CTTCTTTTAC CTCTTATTTG AAGGTATCGC TTTTGGCGTA CAGCCTATTT TGAGTTTTAA TGCTGGTGCC AAACGCTTCG ATAGGGTTAA ACAGGCACTT AAAATGGCCT TCTCTGTGAC CTTAGTGTGC GCCGCCTTAG GTCTCGTCTT TATCTATTCT GTGCCGCAAC TTTTTGTCTA TATCTTTGCC GGTGACAACG ACTTACTCAC GCCGATAGCC ATCGAGGGAA TGCGTTGGTA TTTCTGGGGC TTACCTATGG AAGGCTTGTT ATTAGTGGGT GCATCATTTT TCCAAGCAAT TAATTACTCA AAAGAAGCAT CGATTTTAAC CGGGGCCAAG CTGATCCTGT TTAGCGCTAT CTTGTGTGTG TTTGCCTGGG CATTTGGTGT GACAGGGGTG TGGATCTCAC TGGCTACTTG TAGCACGGTA TTAGCCATCT GGATGGGCTG GATAATGAAG CGTACTCATA GCAAGCTGTT AGCCTAA
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Protein sequence | MTMSQPMPPA GTNRVATDSP MITEPIGKLF WRYSLPTILS MLVTGIYVTI DGMFIGHYLG EVGLAGMILA YPIAAVLYAI GATLGMGGAA LVSIHLGQGE TSIARRILGN TFSLCLISGL ITTVLGCYFS RDILMMLGAE GEILNSADDY LFWYFALGTF PIVSMAFTAL LRNDGRPGFV TFVLILGGVL NTVLDWLLIV VFPYGLMGAA IATMISQAVT GALCLQHFFS SKTEIGINLE QMKLKWDHCA NIIRVGTPSF LMNMYLTVVL TLHNVAFLTV GTPLHVAAYG VVSYTEAFFY LLFEGIAFGV QPILSFNAGA KRFDRVKQAL KMAFSVTLVC AALGLVFIYS VPQLFVYIFA GDNDLLTPIA IEGMRWYFWG LPMEGLLLVG ASFFQAINYS KEASILTGAK LILFSAILCV FAWAFGVTGV WISLATCSTV LAIWMGWIMK RTHSKLLA
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