Gene Spea_2980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_2980 
Symbol 
ID5663370 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand+ 
Start bp3652644 
End bp3653654 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content47% 
IMG OID641237619 
Productisocitrate dehydrogenase 
Protein accessionYP_001502832 
Protein GI157962798 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAAAA GAACTATAAC CGTTATCCCT GGTGATGGGA TTGGCCCAAG CATTATTGAT 
TCAGCACTTA AGATCCTTGA TAAAGCAGGT TGTGATTTTG AGTATGAATT TGCAGATGCG 
GGTTTAACTG CTTTAGAAAA GCACGGTGAA TTATTACCCC AGCGCACCCT TGAGCTTATC 
GAAAAAAACC GCATTACTCT GAAAGGCCCT TTGACGACCC CTGTCGGTGA AGGCTTCACA 
TCGATAAACG TAAGTCTACG TAAGCAATTC TGCCTTTACG CAAACGTGCG CCCAGTGCTG 
TCTTTTAAAG GCACACAGGC TCGTTATGAC AATATCGACA TCATCACGGT ACGTGAAAAC 
ACCGAAGGTA TGTATTCTGG CCTAGGTCAA ACAGTCTCTG AAGACGGCAC TACCGCTGAA 
GCGACCAGTA TCATTACTCG CCAAGGCGCT GAGCAGATCA CTACATTTGC CTATGAACTT 
GCTCGCAAAG AAGGCCGTAA AAAGGTCACT ATCGTACATA AAGCTAACAT CATGAAGTCA 
ACTTCAGGCC TGTTCCTGAA AGTCGCTCGT GAAGTCAGCC TGCGTTACCC AGACATCACT 
ACTGAAGAGA TGATTGTTGA CGCAACTTGC ATGAAGCTGG TGATGAACCC TGAGAACTTC 
GACGTGATTG TTACCACTAA CCTATTTGGT GACATCTTAT CTGATCTATG TGCAGGCCTT 
GTAGGCGGCC TAGGTATGGC ACCTGGCGCT AACATAGGTA GCGACGCGGC AATCTTTGAA 
GCGGTACACG GCAGTGCACC AGATATCGCT GGTAAGAACC TAGCTAACCC AACATCTGTC 
GTGCTTGCAT CGATTCAGAT GCTGGAATAC TTAGGCATGT CAGATAAAGC AGAACTGATT 
CGCGGCGCGA TTACTGCAGT GATTGAAGAA GGCGACCGTA CTACACGCGA TCTTGGTGGT 
ACTCACGGTA CAACTGATTT CACTCAGGCC GTGATTGAGC GTTTATCTTA A
 
Protein sequence
MTKRTITVIP GDGIGPSIID SALKILDKAG CDFEYEFADA GLTALEKHGE LLPQRTLELI 
EKNRITLKGP LTTPVGEGFT SINVSLRKQF CLYANVRPVL SFKGTQARYD NIDIITVREN 
TEGMYSGLGQ TVSEDGTTAE ATSIITRQGA EQITTFAYEL ARKEGRKKVT IVHKANIMKS 
TSGLFLKVAR EVSLRYPDIT TEEMIVDATC MKLVMNPENF DVIVTTNLFG DILSDLCAGL 
VGGLGMAPGA NIGSDAAIFE AVHGSAPDIA GKNLANPTSV VLASIQMLEY LGMSDKAELI 
RGAITAVIEE GDRTTRDLGG THGTTDFTQA VIERLS