| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2973 |
|---|
| Symbol | |
|---|
| ID | 5663363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 3641580 |
|---|
| End bp | 3643751 |
|---|
| Gene Length | 2172 bp |
|---|
| Protein Length | 723 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641237612 |
|---|
| Product | tetratricopeptide domain-containing protein |
|---|
| Protein accession | YP_001502825 |
|---|
| Protein GI | 157962791 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.128138 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATTG TAATTTCCCT AGTATCCTTG ATATTTTTAT CACTCTCTCC TAGCCATGTT
TATGCCGCGT CAAGAGATGA AGTGTTAACA GAAGTGCAAT TAAGAGAAGC GCCGAAAGCG
CTTGAACAAT CATTAGCGAA AACGCTTCCC GTGCTACCTC AATTCACTTC TGCTGAGATG
TTTACTGCTT TTACCCAACA GCGACGACTG CCAAGCGAGG AGGTAAAACG TGACATCCAA
CTTTCTGCTC GCTTAACAAT GGAGCTTTAT AACAAAGATA AAGACCGTTA TATCGCTGCA
AAACGCCTCA CGGATCAACT GGAATATATT AGTCACAGTG CATTCGACAA GAGTTATTTG
TTAATGCTTA AAGGACGCTA CGCGGGGAAA AGCCAACAAG ACTACCTCAG CGCAATCGAA
TACTATCAAC AAGCCGTAGC ACTGCTTGAG CACTCAAATC TTCAGACTGA TCGCGTTCTA
CAGTATACAT TGCAAGAACA CCTCAGTGTC ATGCACATGA TTTTGCGTGA GGAAGTTGTC
GCTTTACAGC ACTTAAGAAA ACTGTCGACA CTCTCCAAGC AGCTCAATAA CGATTATCTG
CTCGCCCATG CTGAATCAAT ATTGGGTAAA TATTATTATC AACAAGATCA ACTCGGTAAG
TCACTTTCTC ATTACACTGA AGCGGTAAAG TACACTAGAA CGGGGAAAAA CGCTTCTCAA
AATGCCCATA TAGAGCTTCA ACTTGCCAGG GTCTATCGAG ATATCGAGTC TTGGGATGAG
GCACTAAAAG CGGCTCATAA TGCCGCCGAT GCTTTTAGTC AGCTTGGTAA CGACAATTAT
TTGTCCTCTT CGATGACGGT CATAGCCATG ATTTATGCCC GCCAAGGGCA ATGGTACAAG
TCGATTGATT ACCATTTGAA TGCACAACAA ATTGAATCAA GGCTAGGTAA CTATATTGGC
TTAGCGCTTA ACCTGCATAA TCTAGGCGAA GCCTACTTCA AAGTTGGTGA CTCCCAAAGT
TCACTGGCTA ACTTAGAGCG AGCCAACGAA ATTTTCACAT CCAAGAAGAG TGACCACTAT
TTAGTTTATA ACGACCTACT CATCGCCGAA GTGACTGCGA GTACTAACGA CTGGACTAAA
TCACTCGATT ACGCCACAAA AGCGGTTGCT ATTGCCGAGT CTAAACAGCT AAATGAAGAG
TTAAAAGAAG CATTAACAAG GCAAACCTAT GCCTTCGAAA AGCTTGGCCG CTATGAAGAT
GCCTTCAACA GCCTTCAGAG GCTAAATAAA TTGAATAACC AGACTAAGCC GCAATCGATA
GGAATAGAGC AGCAGTCACA AGTCATCGAG CAAAAACTTA AGCTCAATTT AAGTCAGAGT
AAAAATGAAT TACAGGCAAA AATTGAGCAG CTTAATATCA GCCGATTAGT CAGCATATTC
TGTATATTTG CCCTATGCTT GGCCCTGTTG TTTTTAATTA AGCAATGGCG CCTCAAGAGT
AAACTCGTCG CTGTAAATTC AAACCTAAGT AAGGCTCAGC TGCTGGAACC TTTCACTGGC
CTTCCAAACT ATTTGGCCTT CAAACTGGAT TTTGAGCGGC AGAATAAACC AACAAAAACA
TTGGTATTGG TTTCACTCTC TGAACAGCTT GATTTTGATC TAGTTCAGGG ATTTCAATGC
AATTCTGATA TGAATACTCA GCAAGTATTA GCGATCAAGA ATGCATTAAA CTGCCAAGCG
TACATTATCC GCCCGGGGGT ATTCTTAATC AGTTTTGACT CACTCATAGA CCCTAATGAC
CTACTCACAA TGCTAACGGA TGTTATTGGT GAGCATCATG GGGAGACAAG CCTTCATATG
GGAATATTAC ACCTGCCATT ATTAGGGGAT TCTGCCATCA AATTATCGGC CGCTCAGCAT
TTCGGCAGCT TGCAGATGTT GTTATCCGCC GCGAGAACAT TAGGTAGCGA GCAAGACTAC
TTTGTCACAA TGAAGGCTCT TAAGTTTGCT TCGGCTGGAA TATTCAATAA GCCCCTTTAC
CTTAACATCG AAAAGAGTAT CGTTCGCGGC ATAATGAAGG TCGAAACCAA TGGCAATAAA
GAAGATATCA TTTGGCCAAG ATGGAAGAGC CATCAAAACA TCGATATCGA TGAAGATAAA
ATCGCCATAT AA
|
|---|
| Protein sequence | MRIVISLVSL IFLSLSPSHV YAASRDEVLT EVQLREAPKA LEQSLAKTLP VLPQFTSAEM
FTAFTQQRRL PSEEVKRDIQ LSARLTMELY NKDKDRYIAA KRLTDQLEYI SHSAFDKSYL
LMLKGRYAGK SQQDYLSAIE YYQQAVALLE HSNLQTDRVL QYTLQEHLSV MHMILREEVV
ALQHLRKLST LSKQLNNDYL LAHAESILGK YYYQQDQLGK SLSHYTEAVK YTRTGKNASQ
NAHIELQLAR VYRDIESWDE ALKAAHNAAD AFSQLGNDNY LSSSMTVIAM IYARQGQWYK
SIDYHLNAQQ IESRLGNYIG LALNLHNLGE AYFKVGDSQS SLANLERANE IFTSKKSDHY
LVYNDLLIAE VTASTNDWTK SLDYATKAVA IAESKQLNEE LKEALTRQTY AFEKLGRYED
AFNSLQRLNK LNNQTKPQSI GIEQQSQVIE QKLKLNLSQS KNELQAKIEQ LNISRLVSIF
CIFALCLALL FLIKQWRLKS KLVAVNSNLS KAQLLEPFTG LPNYLAFKLD FERQNKPTKT
LVLVSLSEQL DFDLVQGFQC NSDMNTQQVL AIKNALNCQA YIIRPGVFLI SFDSLIDPND
LLTMLTDVIG EHHGETSLHM GILHLPLLGD SAIKLSAAQH FGSLQMLLSA ARTLGSEQDY
FVTMKALKFA SAGIFNKPLY LNIEKSIVRG IMKVETNGNK EDIIWPRWKS HQNIDIDEDK
IAI
|
|---|
| |