| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2808 |
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| Symbol | |
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| ID | 5663200 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3429470 |
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| End bp | 3430606 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641237449 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001502662 |
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| Protein GI | 157962628 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.635113 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTAGTG AATTAAAAAA AATTACCCGT TTAGGGCTGT TTGCAGTGGT CTGTTTCTGG
ACGACAGCCT GTGAGAAAAG TGGCACTGAC GAGGCGTTTA ATTATCCAAA CACCGCCAAT
ATTGCCACCG TAACCGCCGA GTTAACTCAA GTCACCTTAT TTGATGAGTT ACAAGGGCGA
GTGCGCCCAT TACGTAGCGC TGAAATTCGC CCTCAGGTTG AAGGGATCAT CACCCAAAGA
TTATTTAAAC AAGGAGATAC GCTTGAGCAA GGCGATGCAC TGTTTCAAAT TGACCAAGAC
ATTTTCATTA TCGATGTTGA GATAAAGCAA GCAGCGCTTG AGCAATCTAT GGCTCACTTA
GCGTTAATAC AAAGCCAAGT TGATCGCTTT ACTCAATTAG ATCGTACTAA GGCGGTAAGT
AAGCAGGCTT TTGAAGAGGC CAGTTTTAAC TTACAAATTG CAGCCGCCAC TGTGCAGCAA
AATCGAGCTC AACTTAAGCA TAGTGAGTTA CAACTTGAGT ACGCGAAAGT AACAGCTCCT
ATCTCAGGGA TTATCGGTGA GGCATTAGTG ACTGAGGGAA GTTTAGTGAG CCGTACCGAG
CCACAGCCAT TAGCCATCAT TCAGCAGATT GATAAGGTCT ATATCGATGT TCGTCAACCC
GCATCGAAAC TTGGGGTATT GCGACGTTTA TTAGCCAATG AACAGAAAAA CAGTGAGCAA
GGGGTCAAGG TGATTGTGCA GTCGTCTGCA GAGAGTGCAG ATGATATTGA AGGGCAAATT
TTATTCTCAG GGATCAGCGT TGATGAAAAT ACCGGCGATC TGGTTATTCG AATTATTGCT
GATAACGCTA AGCAACAGCT GCTACCAGGC ATGTATGTAC GAACTCAAAT TCCCCGTCAG
AAGTTACAAG CAATCACAGT TCCGGAGCAC GCGGTTCGCC GTAACAGTGC GGGCTCGCCG
TTTGTCTACA TTGTTGTTAA CGATAAGTTT GAGCAAAGAC CAGTACAACT AGAAGGGCTG
CAACAGCGAC GATATGTCAT TTCGAAAGGT ATTAATCCAA ACGATATTGT GGTTGTGACT
GGCCAAGATA ATCTGCGCGA AGGGGCTGAG TTAGTCCTGT CAGATTGGCA ACAGTAA
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| Protein sequence | MASELKKITR LGLFAVVCFW TTACEKSGTD EAFNYPNTAN IATVTAELTQ VTLFDELQGR
VRPLRSAEIR PQVEGIITQR LFKQGDTLEQ GDALFQIDQD IFIIDVEIKQ AALEQSMAHL
ALIQSQVDRF TQLDRTKAVS KQAFEEASFN LQIAAATVQQ NRAQLKHSEL QLEYAKVTAP
ISGIIGEALV TEGSLVSRTE PQPLAIIQQI DKVYIDVRQP ASKLGVLRRL LANEQKNSEQ
GVKVIVQSSA ESADDIEGQI LFSGISVDEN TGDLVIRIIA DNAKQQLLPG MYVRTQIPRQ
KLQAITVPEH AVRRNSAGSP FVYIVVNDKF EQRPVQLEGL QQRRYVISKG INPNDIVVVT
GQDNLREGAE LVLSDWQQ
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