Gene Spea_2350 details

Gene Information

• Locus tag: Spea_2350
• ID: 5662743
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 2862562
• End bp: 2863164
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 641236965
• Product: rhomboid family protein
• Protein accession: YP_001502205
• Protein GI: 157962171
• COG category: [R] General function prediction only
• COG ID: [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.0538538
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTAAAAC TCAAATTAGG GGCTAATAGC CCCTATGGGG TCGCGCTGGT CATCACCCTA 
GTTTGTGTCT GTTTTTTTTA TTTGCAACTT GACGCTTTAC TGGCCTATCA GCGAGTGCTC 
ATCCTCGATG GACAGTGGTG GAGGTTACTA ACCGGTAATT TACTGCACAC TAATGCATGG 
CACCTATATA TGAACTTAGC GGGTTTATGG GTGATATTAG CGCTACATGA GCAACACTAC 
CAAGCCAAAG GGTTTAGTGT GCTCTTCTTC ATACTATGCC TTATGCAAGG GATCGGCTTA 
CTGGTGTTTT ATCCAAGTCT TATCGGTTAT GTCGGTTTAA GCGGCATGCT GCATGGACTC 
TTTACATATG GCGCGGTGTT GGATATTCGC AATGGATTAA AATCAGGTTA CCTACTGCTA 
TTAGGGGTAT TCCTAAAAGT CGCCTACGAG CAATACTTTG GTGCAAGCAT TGAGATGACT 
CAGCTCATCG ACGCCAGAGT GGCAACTGAA GCCCATTTAG TGGGACTTAT CAGTGGGCTT 
AGCTGTGTCG GCTCAATTTT AGCTTTCAAA CATTTTCGAG CCAAAACTCG TCCTCAGAAA 
TAA 

 

Protein sequence

MLKLKLGANS PYGVALVITL VCVCFFYLQL DALLAYQRVL ILDGQWWRLL TGNLLHTNAW 
HLYMNLAGLW VILALHEQHY QAKGFSVLFF ILCLMQGIGL LVFYPSLIGY VGLSGMLHGL 
FTYGAVLDIR NGLKSGYLLL LGVFLKVAYE QYFGASIEMT QLIDARVATE AHLVGLISGL 
SCVGSILAFK HFRAKTRPQK