| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2178 |
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| Symbol | |
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| ID | 5662571 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 2637518 |
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| End bp | 2638711 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641236781 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001502033 |
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| Protein GI | 157961999 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.569446 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCTACCA AAAAACAGAT CATTTTACCA ATGGCTGTCA TCGCTATCGG CGTGGCAGGA
TTTATTGGCA TATCGGCATT GAAAAAGCCG CCAGAAGAGA AGGAAGAGCT CGATACCACC
CCCTTGGTCT CTGTCGAGGC AGTCCAAATT AATCCGATGA GTTTTGCAGT CAGCTCCTAT
GGCGTAGTTA ATGCGAAATA TGAGACGGAA CTAGTTTCCC AGCTAAACGG CGAGATCGTT
TTCTTATCTG AAAAATTTGT ACGCGGCGGC TTTGTCAAAA AAGGCGATAT CCTTGCCAAA
ATAGATCCTA GCGATTACGA ATCAGCACTG ATTGATGCGC AGGCGAATAT GGCTTCGGCG
CGAGCGACAT TAGTGCAAGA GAAAGCGTAC GGTAAGGTTG CCGAAGAGGA ATGGAAACGC
ATTAAGAATG GTGTACCGAC TGAACTGAGT CTTAGAAAGC CTCAATTAGC GCAAGAGATT
GCCAAGTTAA ACTCTTCTGA AGCAGGGCTT AAACGTGCTA AACGTAATCT TGAGCGCACC
TTAATTAAAG CGCCATACGA TGCTCTAATC GAGGCGCGTA ACATAGGTTT AGGCTCATAC
GTCAGCATGG GCACACCATT AGGTAAGGTG TTAAGTACCG CAGAAGCTGA GATCCGTCTT
CCTATTGCAG ATAAGGAACT GCAGTTTTTA GATGACAAAG GCAAACATGC ACAAGTGGTA
TTGAAAGGTG AATTCGCAGG TAAGACTCAA GAATGGCCTG CTACTGTGGT GCGTAGTGAG
GGCGTGATTG ATAATCGCAG TCGCATGACC TACTTGGTCG CTGAAGTAAC CGATCCTTAC
GGACTAAAGT CAAACAACAA TGAATTACGC TATGGCACTT ATGTTACTGC AACAATCGAT
GGTACTCATG CGGGTTTAGT CGCAGAACTG CCGCGCCACC TTGTGATCAA CAATCAGGTC
GCGGTGCTAG ATGATGAGGG CAAGCTTAGA TACAAAGACA TCACCATTCT ACGTCAAGTC
GGCTCTAAGG TTATCGTCTC CGATGGTCTC GAATCAGGCA TGAATGTGAT CACCTCTGCT
TTAGATTACC CCATCGAAGG CATGGAGCTA GCTCTGCCTG AAGACAAGTT GTTACGTGAT
GAAGAAAATC CTGAACAGCA ACCTACGCAA ATCGCGATGG AAGATAAGGA TTAA
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| Protein sequence | MATKKQIILP MAVIAIGVAG FIGISALKKP PEEKEELDTT PLVSVEAVQI NPMSFAVSSY
GVVNAKYETE LVSQLNGEIV FLSEKFVRGG FVKKGDILAK IDPSDYESAL IDAQANMASA
RATLVQEKAY GKVAEEEWKR IKNGVPTELS LRKPQLAQEI AKLNSSEAGL KRAKRNLERT
LIKAPYDALI EARNIGLGSY VSMGTPLGKV LSTAEAEIRL PIADKELQFL DDKGKHAQVV
LKGEFAGKTQ EWPATVVRSE GVIDNRSRMT YLVAEVTDPY GLKSNNNELR YGTYVTATID
GTHAGLVAEL PRHLVINNQV AVLDDEGKLR YKDITILRQV GSKVIVSDGL ESGMNVITSA
LDYPIEGMEL ALPEDKLLRD EENPEQQPTQ IAMEDKD
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