| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2024 |
|---|
| Symbol | |
|---|
| ID | 5662417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 2449309 |
|---|
| End bp | 2450325 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641236619 |
|---|
| Product | hydrogenase expression/formation protein HypE |
|---|
| Protein accession | YP_001501879 |
|---|
| Protein GI | 157961845 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0309] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR02124] hydrogenase expression/formation protein HypE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGA ATAATTCTCG AAAAATAGTA CAACTTAGCC ATGGCGGTGG TGGTAAAGAG
ATGAACCACT TGATTAAAGA TCTGTTCTTT AAAGCCTTCG ATAATCCTAT TTTACGCAGC
GAAGAAGATG CAGCTGTTTT GCATTTCGAC GGTAATCTTG CCTTTACGAC AGACTCGTTT
ACTGTCTCTC CCCTTTTTTT CCCCGGTGGA GATATTGGCA AGCTATCCAT TGCAGGAACC
GTTAACGACT TGGCAATGAT GGGGGCTGAG CCACAATATC TCAGCTGCAG TTTCATAATC
GAAGAAGGTT TTGAAATTAC TCACTTAAAA ACCATAGTCG AAAGTATGGC CAACGAATTA
AAGCAATCGG GAGCACGTAT TGTTTGCGGA GATACTAAGG TCGTTCCTCG TGGTTGTGCC
GACGGGATCT TCATTAATAC TTCTGGAGTC GGTCGTATTC TGCGAAAAGG AATATCAGTT
AAAAACCTAG CTAGCGATGA TGTCATTATT GTATCTCGAG ATGTTGGACG ACACGGAGCA
GCAATCTTAA TGGCGAGAGA AGGGCTAGCA CTTGAGTCAG AGCTAACCAG TGATTGCGCG
ACATTATGGC CAATAGTTGA ACAGCTGATA GCGGCAAACA TCGAAATCCA TGCGATGCGT
GATGCAACCC GCGGTGGTCT ATCTGCAGTA CTTAATGAAT GGGCCTGTGC ATCAAATGTC
GAGATCAATG TAAACGAACA AGCGATCCCA GTATGCGATG AAGTGAGAGG ACTTTGCGAG
TTATATGGTT TTGAGCCACT CGATCTCGCC AATGAAGGTA CCTTTATTCT TGCAGTACCA
AAGGAGAGTG CCGACGCGAC ATTAGAAATA ATGAAACGCT TTTGTCATTG CGAGCAAGCA
GCCGTAATTG GTAACGTAAA CGATAACCGC AAAGGAAAAG TTGTACTCAA CACGCCTTGG
GGGAGCTCTC GTTATCTAGA CTTACCACAA GGCGAGCTGT TACCGAGGAT CTGCTAG
|
|---|
| Protein sequence | MNQNNSRKIV QLSHGGGGKE MNHLIKDLFF KAFDNPILRS EEDAAVLHFD GNLAFTTDSF
TVSPLFFPGG DIGKLSIAGT VNDLAMMGAE PQYLSCSFII EEGFEITHLK TIVESMANEL
KQSGARIVCG DTKVVPRGCA DGIFINTSGV GRILRKGISV KNLASDDVII VSRDVGRHGA
AILMAREGLA LESELTSDCA TLWPIVEQLI AANIEIHAMR DATRGGLSAV LNEWACASNV
EINVNEQAIP VCDEVRGLCE LYGFEPLDLA NEGTFILAVP KESADATLEI MKRFCHCEQA
AVIGNVNDNR KGKVVLNTPW GSSRYLDLPQ GELLPRIC
|
|---|
| |