| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2008 |
|---|
| Symbol | |
|---|
| ID | 5662401 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 2433784 |
|---|
| End bp | 2435088 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 641236603 |
|---|
| Product | peptidoglycan binding domain-containing protein |
|---|
| Protein accession | YP_001501863 |
|---|
| Protein GI | 157961829 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2989] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAAGAG TAAAAGCTTT TTGGTGCCAA CTCCTTGTTC GCTTGCTGAT AGTATCTTTT
TCCGCTGTAG TACATGCGGA TATCGCTCCT AGAGTGTCCT TAGATAACCA AAGTGTCGCC
ATGCAGCTGA GTTCGCTCGC ATTCGATCTA GGTGTAATAG ACAGTGCTGC TGAGTCAACT
AATACTGTAG GTTTAGTTAA GCTATTGAAT AAAGAGCTTT TTCAGGTTGA ATTTACAAGT
CTCTCATTAT CAACTGAACA GTATCTAAAA TTAATTAAGC GAAAGGATAT AGCAAGTTAT
AGAAGGCTAA TTAAGCAATA TAAAGCGTTA GATCGCTTTC AGTGGCCGAT GATAAATCCT
ATAGAACTTA GGTTAGGCTT AAGAGTCAAA GAAGTTGCTA AACTCAGGTG GGTCTTAGTC
AAACTTGGGG ATATGGAGCC TCATACTATA GCTGCTTACC GAGAGAGTAT TTATGATCCT
AGTGTTGAGG CGGGTCTGAA ACGCTTTCAA ATAAGGCATG GTTTATCAGT TGATGGCAAA
CTGGGAAATC AAACACTGTT ATCCATTAAT ACCAAGCCTA GCTTCAGAGT CGTTCAACTA
CAGAAGGCTT TAAAATTAAG CCTAAAAAAG TTTGATGAAG AGCAAGAATA CGTCTTTGTC
AATCTTACCG ATTATACGTT ACGGATCAGT AAAAATGGTG TCGAGCAGCT AAAAATGCCT
GTCATAGTGG GAAAACCTAG CAGTAAAACG CCAGAATTAA ACACGGTAGT GAGTGTTGTT
ACTATTAACC CGACCTGGAC TCCACCCGCA AGCATTATTT ATCAGGATAT AATGAAAAGC
GTTGATGAAC ACCCTAACTA TTTGAGGAAT AATAATTTTG TACTTAAGAG TTACAAAACA
GGGATTGAAG ATTCTAATCT CGCAGGTATG GATACTGCTA TTTTGAAGCA CAAGCTAAAA
ACGAGTACTT TAGTTCAGCG CTCCGGCGAT AAAAACGCCT TAGGAAAATT TCGATTTACA
ATCCCAAATA CTAGTGCCAT TTTTCTCCAT GACACACCAA ATAAGTATTT GTTTAAAAGA
GCTAATCGAG CCCTTAGCCA CGGCTGTATT AGGCTTTCTG AACCAGAACG ATTTGCTCAT
TACTTAATTA GCAAAGAGCC CTTACAAACG CAGCATTTAT TTCAAAAAGC GCTTAAAACC
AACAAAACAA TGCATTTCAG ACTGAGAAGC AGGCTGCCAA TTAACATCAT TTATCAAAAT
GTTTGGATTG ATAAAGATGG CCGTTTGCAA ATAAGAGAAA GTTAG
|
|---|
| Protein sequence | MKRVKAFWCQ LLVRLLIVSF SAVVHADIAP RVSLDNQSVA MQLSSLAFDL GVIDSAAEST
NTVGLVKLLN KELFQVEFTS LSLSTEQYLK LIKRKDIASY RRLIKQYKAL DRFQWPMINP
IELRLGLRVK EVAKLRWVLV KLGDMEPHTI AAYRESIYDP SVEAGLKRFQ IRHGLSVDGK
LGNQTLLSIN TKPSFRVVQL QKALKLSLKK FDEEQEYVFV NLTDYTLRIS KNGVEQLKMP
VIVGKPSSKT PELNTVVSVV TINPTWTPPA SIIYQDIMKS VDEHPNYLRN NNFVLKSYKT
GIEDSNLAGM DTAILKHKLK TSTLVQRSGD KNALGKFRFT IPNTSAIFLH DTPNKYLFKR
ANRALSHGCI RLSEPERFAH YLISKEPLQT QHLFQKALKT NKTMHFRLRS RLPINIIYQN
VWIDKDGRLQ IRES
|
|---|
| |