| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1927 |
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| Symbol | yebU |
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| ID | 5662321 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 2336976 |
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| End bp | 2338442 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641236516 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_001501784 |
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| Protein GI | 157961750 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTCATT TTAATCAGAA TTTTCTCGAT AGTATCGAAC GCGATCTCCC TTCTCATCTT
TCTATGGAAG ACTTTATCGC CTACAGCAAT AAACCGTTAC GACTTTCTAT TCGAGTAAAT
ACGCTCAAAA TTAGTCACGA TAACTTTATC GATTTAATGA CGCCAAAAGG CTGGCACTTC
GAGCCTATTC CTTGGTGTAA AGACGGCTTT TGGGTAACGC TCACTCAAGA GATCCAGCTA
GGTAATACCA TCGAGCATTT GCAAGGATTG TTCTACATTC AGGAAGCCAG CTCCATGCTG
CCTCCAACGG CACTATTTGA GCCCCTAGAG GTTGCCGTGG CCGCAGAAAA TACTGAGGAT
GATGGTTCCG ATGACTTTTC CAATAAAATA GTCCTCGACA TGGCTTCTGC ACCAGGGTCA
AAAACCACCC AGATTGCGGC ACTGATGAAA AACCAAGGGC TGTTAATAGC CAATGAATAC
TCTGCTAGCC GAGTAAAAGT GCTGCACGCC AATGTGGCGA GGATGGGCGT GGCTAACTGC
GCGTTAACCC ATTTTGATGC ACGAGTTTTC GGTGAGTATA TGTTCGAAAC ATTTGATTCA
ATTCTACTCG ATGCCCCTTG CAGCGGTGAA GGCACCATCC GCAAAGATCC TGACGCACTA
AAGAATTGGG ATAATAATGA TGACAAGGGC ATTGTCGAGA CCCAAAAAGC ACTGATTGAA
TCTGCTTTTT TAGCATTAAA AGTCGGCGGC AGCCTTGTTT ACTCGACCTG TGCGTTAAGC
CGACAAGAAA ACCAAGATGT ATGTCACCAC CTGAAATCTC TCTATGGTGA TGCCGTTGAA
TTCGGTTCTT TGGCTACACT ATTCCCACAG GCGGATAAGG CTTGTACCGA AGAAGGCTTT
TTACACGTAT GGCCTCAGAT CTACGACAGT GAAGGCTTCT TCGTAGCAAA AATATACAAA
ACCTCAGCAG TAGAACGTCA GCTGCCTGAG CCGAGAAAAC AGAAGAACTT TCCATTTACA
TTGGCAAAAC CTAAGCAAGT CGAAGAGTTA GCACAATACT TTAGAGACAG CTTTTCTATT
AGCCTACCCG ATAATGCACA GGTGATGGTG CGCGATTTGG AGTTTTGGCT GTTTCCAAGC
CCTGTTATTC CATTAATAGG TAAGATGCGT TATCAACGGA TAGGAATAAA ACTCGCCGAT
GCGTTAAAGA AAGGCTACAA GGTTCGCCAT GAAGCCGTTT TAGCTTTGTC ATCCCCTACT
CGTTTCGAAC TCAGTGATGA GCAAGCTAAA GAGTTTTTAA TGGGTCGAGA CATCAGCTTA
CTAGAAAAGG GGAAACCTCA AGGGGAAGTT ATCGTCAGCT ATGCTAGCAA CCCGCTCGGT
GTTGCTAAGC ACTTAGGCAA TAAATTAAAG AACAATCTTC CAAGAGACTT AGTCAAAGAT
AAGATTGCCC TGTATTCACA TAATTAG
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| Protein sequence | MAHFNQNFLD SIERDLPSHL SMEDFIAYSN KPLRLSIRVN TLKISHDNFI DLMTPKGWHF
EPIPWCKDGF WVTLTQEIQL GNTIEHLQGL FYIQEASSML PPTALFEPLE VAVAAENTED
DGSDDFSNKI VLDMASAPGS KTTQIAALMK NQGLLIANEY SASRVKVLHA NVARMGVANC
ALTHFDARVF GEYMFETFDS ILLDAPCSGE GTIRKDPDAL KNWDNNDDKG IVETQKALIE
SAFLALKVGG SLVYSTCALS RQENQDVCHH LKSLYGDAVE FGSLATLFPQ ADKACTEEGF
LHVWPQIYDS EGFFVAKIYK TSAVERQLPE PRKQKNFPFT LAKPKQVEEL AQYFRDSFSI
SLPDNAQVMV RDLEFWLFPS PVIPLIGKMR YQRIGIKLAD ALKKGYKVRH EAVLALSSPT
RFELSDEQAK EFLMGRDISL LEKGKPQGEV IVSYASNPLG VAKHLGNKLK NNLPRDLVKD
KIALYSHN
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