| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1823 |
|---|
| Symbol | |
|---|
| ID | 5662218 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 2223974 |
|---|
| End bp | 2224387 |
|---|
| Gene Length | 414 bp |
|---|
| Protein Length | 137 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641236413 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001501681 |
|---|
| Protein GI | 157961647 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000376424 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTACGG AAAAAGAAAC CGCATTACTC GATGCGGCCA CAGAACTAGT ACAAGAAAAA
GGCATGATCG CACTGAATAT GTCAGATGTT CACAAGCGAG CCGGATACTC TCGTGCCGCT
CAGTACCAGT CATTTAGTGA TAAAAATGCA CTTCTTGCGG CACTGTGTAT GCGCGAACTA
GTGAACAACA CTCTGGCTAT CGAAGAGCAG CGCTTTGATG ATTTCACTGG CAATTTTTCG
GTAGTGCTCA GACCTGTCGT CTATCGTTAC TTAAAGTTAT CAGACAGATT AATGATCGAC
TCGGCCTTCG GTCTGATGCT AACTCAAGTA CGCTCGCTCC CCGATGAAGA GCGCTTCAAC
TTCTTAAAGA GTGGTTTCGA ATTCTTGAAT AAAGAACGAG AAATGAACAA GTAG
|
|---|
| Protein sequence | MLTEKETALL DAATELVQEK GMIALNMSDV HKRAGYSRAA QYQSFSDKNA LLAALCMREL
VNNTLAIEEQ RFDDFTGNFS VVLRPVVYRY LKLSDRLMID SAFGLMLTQV RSLPDEERFN
FLKSGFEFLN KEREMNK
|
|---|
| |