| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1516 |
|---|
| Symbol | |
|---|
| ID | 5661913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 1841922 |
|---|
| End bp | 1842734 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641236104 |
|---|
| Product | putative hydrolase |
|---|
| Protein accession | YP_001501376 |
|---|
| Protein GI | 157961342 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0657] Esterase/lipase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.753217 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAGC ATCAGCTAAA GAAAGTGCAT TATGGCAACG ATAGTCAACA GTTTGCCCAC
CTTTATACAC CGAGTCATAA AGAGAAACTA ACAGCTGTTG TTATCGTGAT TCATGGTGGT
TATTGGAAGG ATAATCATAC TCTTGAAACA TATGCTACCA GTGCCATTGT TGATTACTTG
CAAGGCTTTA ATGTCGCAAT ATGGAACTTA GAATATCGTA GAATGGATAG TGTAGGCGAC
AATATCAAAG CGCCATGGCC CGCAACATTT AAGGATATTG CAGCAGGCAT AGACATGCTT
CAACATATTA GCCTTGAGGA GGGTTTGGAC TTAAGCCGGA TCCTATTAAT CGGGCATTCT
GCCGGCGGAC ATTTGGCAAC TTGGGCGGCT TCTAGAGCGA AGATATCTCC AAGCAGTCCC
CTCTTCAGCC CACAAGCACT TGCTATTCGA AACGTTATTT CTATTAGCGG CATACTAGAT
TTAACCGCTG CCGATGATCT TGAACAGCCT CAGCAAATAC ATAGGCTAAT GGGAGGAACG
CCAAAAGATT TTCCTGAGCG TTACCAAGCA TGCAACCCAA GCGACTTACC CGCAATGCAC
CTTAACCTAA CATTAGTGCA TGGTGAGCTC GACACTTGTG TCAAAATTGC TCAGCTCAAG
CGCTATAAAG AGCAAACAAG CCAAGATATA AAGCAAATTA GCATACCAAA TGCAGATCAT
TTCTCGATGT TACCCCATGA GGGGAACTGG CAAGAGTCTC ACTGGGTGGT TATCAAACAG
CTTATAGCAG ATGAAATCGA CGCCTTAGCT TAA
|
|---|
| Protein sequence | MNKHQLKKVH YGNDSQQFAH LYTPSHKEKL TAVVIVIHGG YWKDNHTLET YATSAIVDYL
QGFNVAIWNL EYRRMDSVGD NIKAPWPATF KDIAAGIDML QHISLEEGLD LSRILLIGHS
AGGHLATWAA SRAKISPSSP LFSPQALAIR NVISISGILD LTAADDLEQP QQIHRLMGGT
PKDFPERYQA CNPSDLPAMH LNLTLVHGEL DTCVKIAQLK RYKEQTSQDI KQISIPNADH
FSMLPHEGNW QESHWVVIKQ LIADEIDALA
|
|---|
| |