| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1239 |
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| Symbol | |
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| ID | 5661638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1511101 |
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| End bp | 1513311 |
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| Gene Length | 2211 bp |
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| Protein Length | 736 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641235801 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001501101 |
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| Protein GI | 157961067 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG1301] Na+/H+-dicarboxylate symporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGTA AAACGGATAC TATAGAGCCA GAAGCGAACG ATACCGAGCA ACAAAAACCA
AAGCAGAAGA TGAGTATGTC GACTCTGGTT TTATTGTCGT TTGCGGCAGG TATTATTGCA
GGGCTATTTT TTGGTGAGAT GTTGGCGTGG ATGTCTGTCA TTGGTGATGC ATTTATTAAA
CTGCTGCAGA TGACGATTAT TCCCTACATC ATAGTGTCCT TGGTCTCGAG CCTCGGTAGT
TTGACCATGG AACAGGCTAA ATCTTTGGGG GTGAAGGTTG GTAAGCTAAT GTTGGTGATC
TGGGCCTTTG GTCTACTGAC TATGTATCTT ATCAAGTACA CCTTTCCCGA CTGGCAGGCG
GGGGAATTTT TTAGCTTAAC AGCTCTAGAA GATCCCAATT CGGTAAACTT ACTCGATATC
TATATTCCTT CCAACCCGTT CTTTTCATTG TCGAACAGTT ATATCCCTGC AATTGTGCTG
TTCTGTGTCG CCACGGGTAT TGCGCTGATC TCTATCGATA ATAAAGACTC GCTTATGAAG
CCGATGCAGC TGCTTGGAGA GTCGTTTAAT AAGGTGACTC AAAGCATTGT TAAATTAATG
CCGATTGGTA TCTTCGCCAT GACAGCGGCG ACAGCGGGCA CCATGGACTT TGACGAGTTT
CAAAAGTTAC AGGTCTATTT TGTAGCCCAT GTGGTGATGA CTATTATCCT GACTTACTGG
GTCTTGCCGG GTATTTTAAT GGTGATCACT CCCTTCTCTT ATCGAGATAT CACGGGGATT
GCTAAAGATG CGATGATCAC GGCATTTGCT GCGGGCAATA TTTTTATCGT TATTCCTATT
CTCATTGAGC GTACCAAAGA GTTATTCCAT AAATATAATA TCGGCAGCCA GCAGAGTGAT
GACTATGCCA ACATCATTAT TCCTGTTGTG TTTAGCTTCC CAAATCTAGG CAAATTACTC
ACCATAGTCT TTGTGCTTTT TGCGGCTTGG TTTTCAGGGG CTGAACTGGA TTTTTTAACT
TACTTGCCCA TGTCATTAAA TGGTTTAGTG AGCCTGTTTG GTAGTGTTTA TTTGACCATA
CCTATGCTAC TTGATTCTCT AGAGCTTTCC TCCGATCTGT TTCAGTTGTA TATGGTCTCT
AGTCTGTTCA CCAGTCGTTT TACCTCTTTG CTTGCTGCGA TGAATATTTT CATCTTGGCT
ATAGGCGGTA CGGCGATGTT GGTCGGTATC GCTAAAGTGA GCATGAAGCG ATTAGCAATT
GTAAGCCTAC TGACTCCAGT GGTGTTCGGT GTGAGTTTAC TGGCAACGAG CTGGTTACTG
AGCTCTATCG TCGATACCGA GTATGAGATG GATGAAGTCG TGGCGCAGAT GAGTGCGGCA
GAGAAAGTGC CTGATCAAGT TACCGCCTAT AACTGGGCTG ACTTAGCTCA AGCTGATGGA
CCTCGCAACA TGCAGCAGAT TAGAGAGAGC GGTGTGATCA GAGTCGGCTA CAACCCGACG
CAGGTTCCTT TCTCTTTTTA TAATGCCGAT CAACAGCTAG TAGGATTTGA TGTTGAGCTA
ATGAAAAAGT TAGCGCTAGA GTTAGAGCTT AAAATTGCAT TTGTACCTTA TACCTTCAGT
AACGTTTTAG AGGGGATCAA TCAAGGTCAG TTTGATATTG CGATATCGGG TTTGCAGATG
ACAACCAAGC GAATCGAGCT GGTGGGCTTT ACCACTCCTG TGCTCGACCT GCACTACGCG
TTTGTGGTGA AGGATCATCG CGTTGATGAG TTTAAAACTG ACAAGTTAAT TCGTGATGCC
GACAAGATTC GTATCGCCAC AGTGGGTCGT TATTCAATTA TTCCGCAGTT AGAAGAGAAG
TTTCCCAATA TCGAGTTTGT GACTATTCAG TCGGACCGAT TGTTTTTTGA AGATGACGGC
AAGACCTGGG ATGGGCTTAT GATAAGTCTC GAAGCGGGTA AAACTTGGAC AATCTTATAC
CCAGATTACG CCACACTTTA TAATCGTGAA GAGATTAAGT CGTTTCCCGC TTCCTACGCA
GTGGCTCGTG ACAACGCCTC GCTACAAACC TTTTTAAATA GCTGGCTTGA GCTACAAAAG
TCATCAGGTT ATGTCGACAA ACTGTATGGT TATTGGATTT TAGGTGAGAA TGCCAAGCCC
CAAAAGCCAC GCTGGTCAGT AATAAAAGAT GTGTTACATT GGGTTGATTA A
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| Protein sequence | MSSKTDTIEP EANDTEQQKP KQKMSMSTLV LLSFAAGIIA GLFFGEMLAW MSVIGDAFIK
LLQMTIIPYI IVSLVSSLGS LTMEQAKSLG VKVGKLMLVI WAFGLLTMYL IKYTFPDWQA
GEFFSLTALE DPNSVNLLDI YIPSNPFFSL SNSYIPAIVL FCVATGIALI SIDNKDSLMK
PMQLLGESFN KVTQSIVKLM PIGIFAMTAA TAGTMDFDEF QKLQVYFVAH VVMTIILTYW
VLPGILMVIT PFSYRDITGI AKDAMITAFA AGNIFIVIPI LIERTKELFH KYNIGSQQSD
DYANIIIPVV FSFPNLGKLL TIVFVLFAAW FSGAELDFLT YLPMSLNGLV SLFGSVYLTI
PMLLDSLELS SDLFQLYMVS SLFTSRFTSL LAAMNIFILA IGGTAMLVGI AKVSMKRLAI
VSLLTPVVFG VSLLATSWLL SSIVDTEYEM DEVVAQMSAA EKVPDQVTAY NWADLAQADG
PRNMQQIRES GVIRVGYNPT QVPFSFYNAD QQLVGFDVEL MKKLALELEL KIAFVPYTFS
NVLEGINQGQ FDIAISGLQM TTKRIELVGF TTPVLDLHYA FVVKDHRVDE FKTDKLIRDA
DKIRIATVGR YSIIPQLEEK FPNIEFVTIQ SDRLFFEDDG KTWDGLMISL EAGKTWTILY
PDYATLYNRE EIKSFPASYA VARDNASLQT FLNSWLELQK SSGYVDKLYG YWILGENAKP
QKPRWSVIKD VLHWVD
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