Gene Spea_0927 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_0927 
Symbol 
ID5661326 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand- 
Start bp1136395 
End bp1137012 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content46% 
IMG OID641235472 
Productcold-shock DNA-binding domain-containing protein 
Protein accessionYP_001500789 
Protein GI157960755 
COG category[K] Transcription
[S] Function unknown 
COG ID[COG1278] Cold shock proteins
[COG3326] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAAAG CTCAAGTATC AACGGGTGTG ATAGACAGTT GGAATGACGA TAAGGGATTT 
GGTTTTATTC AAATCCCAGA GCAAAAACAG CAGGTTTTTC TTCATATTTC AGCCTTTGCT 
AGTCAGAGTC CTAGGCCGCA AAGCGGTAAG CAAGTCCAAT TTACCTTAGC TAAAGACAAG 
CAAGGTAAGT GGCGCGCTGA AAAAGCGCAA CTGCTCAGTG GCGGCAGCGT AAAGTCGAGC 
CGAAAAATTA GCAGCAAACC AAATCGATTA AGCATAACTG TGGCTCTCGG CTTTTTTGCC 
ACCTTGAGCA TTAGCTACTC ACTACAACAC ACCCCTCTTT GGCTTCTGCT CTACTTTATC 
TCGGCGAGCC TAGTGACCTT TATCGCCTAT GGTTGGGATA AACGAGCAGC CAAGAAGCAA 
GGTTGGCGTG TCAGTGAATT AAAGCTGCAC CTATTAAGTG TGGCTGGTGG CTGGCCCGGT 
GCACTGCTTG CCCAACAGTG GCTCAGACAC AAGTCGGCTA AGAGCAGATT TAAGTTTATC 
CTGTGGTTAA CGATAAGCAT AAATCTAGCA CTTATTTATC TTATCCATCG GCCAGAGTTG 
AACACAGTGT TAAGCTAA
 
Protein sequence
MTKAQVSTGV IDSWNDDKGF GFIQIPEQKQ QVFLHISAFA SQSPRPQSGK QVQFTLAKDK 
QGKWRAEKAQ LLSGGSVKSS RKISSKPNRL SITVALGFFA TLSISYSLQH TPLWLLLYFI 
SASLVTFIAY GWDKRAAKKQ GWRVSELKLH LLSVAGGWPG ALLAQQWLRH KSAKSRFKFI 
LWLTISINLA LIYLIHRPEL NTVLS