| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0557 |
|---|
| Symbol | |
|---|
| ID | 5660957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 684117 |
|---|
| End bp | 685310 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641235102 |
|---|
| Product | putative plasmid transfer protein |
|---|
| Protein accession | YP_001500420 |
|---|
| Protein GI | 157960386 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTAG ATAAAATTGC ATTGGCATGC GCCATAGTCC CCTGTTTTAC AGCCCAAGCA
GGGCAAGAAT ATTATGAGGC ACGCAGTGAT GCGATGGGAG GGGCGGGAGT AGCCGCTTCA
AATAGAGAAG GCGCGGCATT TGTTAATCCC GCCCTACTTG CGATTAATGC CCATAAAGAC
AACTCCGCCG TGTTACTGAT CCCCGCGATA GGGGCCGATG TGGCCGATAG TGATGACATG
ATCGATAAGT TCGATTCACT GATCGATTCT TATGACGCGC TCGAGGCCGC AATCGATGTT
GGCAATACCG CTGCTATTGA CGAGTTTCGT GATGATCTCG TTTTCGACTT AGAGTCACTA
AATGGCAATT CAGCCTATGC CAGTGCGGGG CTTGGTTTTA GTGTGGCGAT CCCCTACCAG
AGGATGCCGA TGGCTATCTT CTATAAGAGT TATGTTAACG CCGTTGGAGT TGCCGATATT
GCGCAATCAG ATATCGACGC CCTCAATAAT CTCGATCCTA ATAACCCTCC AAATATCAGT
GATCTGGACT CCCAAGGGCA AGTGGTTGGT GGCGCGGTAT CTGATTTCGG TATTGCACTA
AGTTTTCCGC TGTCTATCGT AAACATGCCG ATAGCAGTGG GAATTTCGCC TAAGTTTCAG
CGTATCGACA GCTACAACTA TATCGCCAAT GCTAACAACT TTGATGCCAG TGATTTTGAC
GATGCCAAAT ATCGCAATGA TGAGACTAAC TTTAACTTAG ATATTGGTGT CGCCATGCAA
GCATTCGATG GTTTGACCTT AGGCCTGTCG GGGCGAAACC TGATCAGCCA AGATGTGGAT
ACCATAGAAG TTGAAGGGCA GAAGTTTACT TATCGAGTCG AGCCACTTGT GACCGCTGCT
GTGGCCTATG ATTGGGATAT TTTATCGGTG ACCACAGATA TCGATCTAAT TGAGAATAAG
AAGTTTAAAG AGCTGGATGG TACTCAATAT TGGCGTGTAG GTGGTGAAGT GAGGGCCTTC
GACTGGATGG CGCTAAGAGT GGGTTATCGT CATGACATGA AAGATTCTAC TGCTAACCTT
TACTCTTTGG GTTCAGGCTT TGCTTTTGGT GACTCATTTT TCTTAGACCT TACTGGTATG
TTTGGTGATG ACAATGCGGT AGGAGGCGTG CTGCAAACCT CCTACCATTT CTAA
|
|---|
| Protein sequence | MKLDKIALAC AIVPCFTAQA GQEYYEARSD AMGGAGVAAS NREGAAFVNP ALLAINAHKD
NSAVLLIPAI GADVADSDDM IDKFDSLIDS YDALEAAIDV GNTAAIDEFR DDLVFDLESL
NGNSAYASAG LGFSVAIPYQ RMPMAIFYKS YVNAVGVADI AQSDIDALNN LDPNNPPNIS
DLDSQGQVVG GAVSDFGIAL SFPLSIVNMP IAVGISPKFQ RIDSYNYIAN ANNFDASDFD
DAKYRNDETN FNLDIGVAMQ AFDGLTLGLS GRNLISQDVD TIEVEGQKFT YRVEPLVTAA
VAYDWDILSV TTDIDLIENK KFKELDGTQY WRVGGEVRAF DWMALRVGYR HDMKDSTANL
YSLGSGFAFG DSFFLDLTGM FGDDNAVGGV LQTSYHF
|
|---|
| |