| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0540 |
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| Symbol | |
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| ID | 5660940 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 661959 |
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| End bp | 663338 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641235085 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001500403 |
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| Protein GI | 157960369 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.547771 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACGA ACAATAAAGA AACGGTACAA ACAATGATGC TTAATAACGG CACGGCTAAA
TCTCGCTTAT TCGATCTTAA TGCGATCACT CGCGCCATGA GCTTCGGCTT CTTTATGAGC
CTCACCACGG CATTTGTGTT GCCAACGGTA GCAACCGCTG GCGATGGCCA CGATCACGAT
GCAGAAGAGA TCGTATTGAT TAAAACACAA GACGATGGTC ATGATCATAA CGCCGAAGAA
GCTAAAGCGC ACGATGACAG CCATGAACAT AAGGCTGAAG AAGCCAAGGC ACACGATGAT
GACCATGCTC ATGATGCCGA AGAGGTGAAG GCAAAAGATG ACGGACACGG CCATGGTGAG
GAAGAAGCGG AAGAGGAGGC CCACGGTATC GAGCTGACTG CCGCGCAATT AGCATTGGCT
AAAATTGATG TGGCTCAGCT TAGTGAGCAG ACTTTCAGTC TAGAAGATGT GGCGACAGCA
ACCATAGTGG TGGATAGGGA CAGAACTGTA ACTATCGCGC CTCAGGTGGA TGTACGCGTG
CTAAAAAGAA ATGTGGTTCC GGGCCAAGAA GTGGCTCAGG GTGATGTATT GCTAACCCTT
GGCGGGGTTG CGGTTGCTCA GGCACAAGCC GATTATATCA ATGCCGCAGC TGAGTGGAGT
CGAGTAAAGC GTATGAGCGC CAGTGCGGTG AGTGCTAGCC GTCGTTTACA GGCGCAGGTG
GATGCTGAGC TTAAGCGTGC CATTCTAGAA GCGATGAAGA TGACACCAGC ACAGATCAAG
GCGCTGGCTA ATGCCCCTGA AACTATCGGT AGCTATCAGC TAATCGCACC GATTAACGGT
CGTGTGCAGC AAGATATCGC GCTATTAGGT CAAATCGTAC CTGCAGGTAC GGCGCTGATG
CAGCTAACCG ATGAGTCACA TCTTTGGGTG GAAGCAGAAT TAACACCGAC TCAAGCCGAG
AAAGTCAGCC TAGGCAGTAA AACCGTGGTT AAAGTGGGTG ACAAGAGCAT GGAAGGCACC
ATTATCGGTC GTTCACATGA GCTTGATAGC GTGACGCGTA CCGAGCAGAT CTTAGTGGCG
TTTGAAAACG CAGGTCATGT GCTACACGCC GGCCAATTCG CTGAACTTTA CCTACCAGAT
GCCTCTCAAG GTGGGGTGAT CCTACCTGAT TCGGCGTTGA CTCGTAGCAG CGATGGTCAT
TGGCAGGTAT TTATCGAAGG CGCTGAGGGC TTCGAAGCAT TAGAGGTTGA AGTGGTTGAA
CGTCAGCGCG GCATGAACTT AGTTCGTGGC TTAACGAAAG ACATCAAGGT TGTTGTCTCT
GGGGCATTTT TCCTAGCCTC TGAGCAGGCT AAATCTGGTT TCGACATCCA CAATCACTAA
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| Protein sequence | MKTNNKETVQ TMMLNNGTAK SRLFDLNAIT RAMSFGFFMS LTTAFVLPTV ATAGDGHDHD
AEEIVLIKTQ DDGHDHNAEE AKAHDDSHEH KAEEAKAHDD DHAHDAEEVK AKDDGHGHGE
EEAEEEAHGI ELTAAQLALA KIDVAQLSEQ TFSLEDVATA TIVVDRDRTV TIAPQVDVRV
LKRNVVPGQE VAQGDVLLTL GGVAVAQAQA DYINAAAEWS RVKRMSASAV SASRRLQAQV
DAELKRAILE AMKMTPAQIK ALANAPETIG SYQLIAPING RVQQDIALLG QIVPAGTALM
QLTDESHLWV EAELTPTQAE KVSLGSKTVV KVGDKSMEGT IIGRSHELDS VTRTEQILVA
FENAGHVLHA GQFAELYLPD ASQGGVILPD SALTRSSDGH WQVFIEGAEG FEALEVEVVE
RQRGMNLVRG LTKDIKVVVS GAFFLASEQA KSGFDIHNH
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