| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0438 |
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| Symbol | |
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| ID | 5660838 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 544215 |
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| End bp | 546605 |
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| Gene Length | 2391 bp |
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| Protein Length | 796 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641234975 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_001500301 |
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| Protein GI | 157960267 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01553] formate dehydrogenase, alpha subunit, proteobacterial-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAACC ACTGGATCGA TATTAAGAAC GCAAGTGTCG TGGTGATCAT GGGCGGTAAT
GCCGCTGAAG CACATCCTGT CGGTTTCGGT TGGGTAACGG AAGCTATGGA ACACAATAAC
GCCAAATTGG TGGTTGTGGA TCCACGCTTT AACCGCAGTG CAGCATTAGC TGACTGCTAT
GCACCACTTC GTAGTGGTAC TGATATCGCA TTCCTTTTAG GTCTAAGTCG ATACCTCATT
GAGACTAAAC AAGTTAACTA CGAGTATGTT AAAGCGTATA CCAACGCAAG TTACATCATT
CGTGAAGATT TCGAATTCAA TGAAGGCCTA TTTAGTGGTT TTGATGAGAA GAGTCGTACT
TACGACAAGG ATTCTTGGTA CTACGAATTA GATGAAGATG GTTATGCCAA AGTCGATGAA
ACTTATGAGC ACCCACGTTG TGTGTGGAAC TTATTAAAGA ATCACGTTGA CCGTTACGAC
TTTGAAACCG TAAGCAATAT TACCGGTACA CCAGTTGAAG ATTATGAAAA AGTTTGTGCG
TTAATTGGTA GCACACACGT TCATGATAAA GCGGCGACCT TTATGTATGC ATTGGGCTGG
ACCCACCACA CTAAAGGCGC ACAGAACATT CGTTCTATGG CATTAGTGCA GTTGCTACTG
GGTAATATCG GCGTATTGGG TGGTGGTGTT AACGCACTGC GTGGTCACTC AAACGTACAG
GGCGCAACCG ACATGGGTCT GTTATGTCAG AACCTGCCTG GTTACTTAAA GCTACCAAAT
GACAACGATA CCGATTTAGC GACATACCTA GATAACTATA CGCCTAAGCC GTTGCGTCCA
GGCCAAACTA ACTATTGGTC TAATTATCCT AAGTTCTTTA TCTCACAGAT GAAGAGTTTC
TGGGGCGAGA ACGCGACAGC GGCGAATAAC TTTGGTTATG ACTGGTTACC TAAGTGGGAT
TTACAGTACG ACTACACCAA GCACATCGAC ATGATGTACA AGGGCCAAGT TAACGGTTAC
TTCGTGCAAG GGGTTAACGC AATTAACTCT ATGCCAAACC GTAACAAGAC CTTAGCGGCG
TTATGTAAGC TCAAATACTT GGTCGTAATG GATCCGCTAG CGACAGAGAC TTCTGTATTC
TGGCAAAAAG CCGGTGAGTT TAACGACGTG CAGCCAAGCG AAATTCAAAC GCAAGTTTTC
CGCTTACCTA CGACGTTATT TGCTGAAGAG GAAGGCTGTA TCGTTAACTC GGGTCGCTGG
ATGCAGTGGC ACTGGAAGGG CGCTAATCCA CCTGGTGAGT CAAAGCCTGA TGCTGAAATT
TTATCTGGCA TCTTAATGAA GCTGCGTGAG CTGTATAAAG CGGAAGGCGG CGTGCTACCA
GAGCCGATTG AAGCGGTTAA CTGGGCAGGC TATCACAATC CACACTTCCC ACACGGCGAA
GAAGTGGCAA AAGAGCTTAA CGGTATCGAT CTTAAAACCG GTAAGCAGCT TGATAGCTTT
AGTCAGTTAA AAGACGACGG TAGTACCTCA TGTGGTTGCT GGATCTACTC AGGTTCCTGG
ACCGAAGCCG GCAACATGAT GGCGCGTCGT GATAACTCTG ATACGTCAGG CAAAGGTATC
ACCCCAGGTT GGGCATTCTC GTGGCCACAA AACCGCCGCG TACTATACAA CCGCGCATCC
TGTGATGTTA ACGGTAAGCC TTGGGATCCA AAGCGCATGA TCGTTGAGTG GAACCACGGC
AAGTGGCACG GCATCGACGT GGGTGACTTC AATATGACGT TACCGCCAAA AGAGTCGGCG
CATCCGTTCA TTATGCAGCC TGAAGGTGTG GGTCGTTTCT TCTCACTTAA GATGCTAGCT
GAAGGGCCAT TCCCTGAGCA TTACGAGCCA ATGGAGACGC CAATCGGCAC TAACCCATTG
CACCCGAAGG TGATCAGTAA CCCTGCGGTA CGTTTGCTAG AGGGTGTTGA AGAGACATTG
GGTTCACATA CGGAATTTCC ATATGTGTGT ACCACTTACT CCTTAACCGA ACACTTTAAC
TTCTGGACGA TTCACTGTCG TTTAGCGGCG ATTTCGATGC CTGAAACTTT CGTTGAGTTA
GACGAAATTC TCGCAGCGAA GAAAGGCATT GCTAATGGCG ATTGGGTCAA GGTGAGCTCT
AAGCGCGGTA GCTTGATGAC CAAAGCTTTG GTGACTAAGC GTCTGCAGCC ACTTAAGGTG
CATGGCCAGA TGGTGCATAC CGTTGGCCTG CCGCGTCATG GTGGCTATAA CGGTCTAACT
CGTAGAAGTT CTAGTTGTAA CGTACTGACC ACAGAAGTGG GCGATGCAAA TACACAGGTG
CCTGAATTTA AAGCATTCCT TGTGGATATT GCTAAGGCTG AGGGAGTTTA A
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| Protein sequence | MTNHWIDIKN ASVVVIMGGN AAEAHPVGFG WVTEAMEHNN AKLVVVDPRF NRSAALADCY
APLRSGTDIA FLLGLSRYLI ETKQVNYEYV KAYTNASYII REDFEFNEGL FSGFDEKSRT
YDKDSWYYEL DEDGYAKVDE TYEHPRCVWN LLKNHVDRYD FETVSNITGT PVEDYEKVCA
LIGSTHVHDK AATFMYALGW THHTKGAQNI RSMALVQLLL GNIGVLGGGV NALRGHSNVQ
GATDMGLLCQ NLPGYLKLPN DNDTDLATYL DNYTPKPLRP GQTNYWSNYP KFFISQMKSF
WGENATAANN FGYDWLPKWD LQYDYTKHID MMYKGQVNGY FVQGVNAINS MPNRNKTLAA
LCKLKYLVVM DPLATETSVF WQKAGEFNDV QPSEIQTQVF RLPTTLFAEE EGCIVNSGRW
MQWHWKGANP PGESKPDAEI LSGILMKLRE LYKAEGGVLP EPIEAVNWAG YHNPHFPHGE
EVAKELNGID LKTGKQLDSF SQLKDDGSTS CGCWIYSGSW TEAGNMMARR DNSDTSGKGI
TPGWAFSWPQ NRRVLYNRAS CDVNGKPWDP KRMIVEWNHG KWHGIDVGDF NMTLPPKESA
HPFIMQPEGV GRFFSLKMLA EGPFPEHYEP METPIGTNPL HPKVISNPAV RLLEGVEETL
GSHTEFPYVC TTYSLTEHFN FWTIHCRLAA ISMPETFVEL DEILAAKKGI ANGDWVKVSS
KRGSLMTKAL VTKRLQPLKV HGQMVHTVGL PRHGGYNGLT RRSSSCNVLT TEVGDANTQV
PEFKAFLVDI AKAEGV
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