| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0305 |
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| Symbol | |
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| ID | 5660705 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 343190 |
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| End bp | 345226 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641234835 |
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| Product | diguanylate phosphodiesterase |
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| Protein accession | YP_001500168 |
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| Protein GI | 157960134 |
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| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00410] PTS system, lactose/cellobiose family IIC component |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGTTAC GCTATATCTC TTCTAGAGTG TTAAATTGGA GTAAGGAGTC TAAGCTCTAC
TTATCAGACC TTGCAGCCAT TGCCTTATTG TTGCTGCCGA TAACGTTAGC AAGCTCGTTA
GCTATGTTGC TAGGGCATGC ATTTAGAGTA CTTGAAATAG CGAATGTCTC AGAGTTGCTT
TTCTATGTCT CAGATATATT GATTAACCTA TATCCAACGA CATTCTGTGT TGTGGCCAGT
TATTACCTCT CACAAAAAAC CAATGCCTCT AGTGCCATTT TTATTATCTA TGCATTAGTG
CTGTTTTATA TTCTCTCCAT AGGAAACCAA GACTTCTTGA CGAGTCATAC ATTGCCAAAT
AATCCACTGC TGGCCTTATT AAGTGCAATT GTGACCTACT TATATTACTT CTACTTTCCT
GTTCGTCTTT TGGACCCTAA CTCATTTGAT TTTGCGTCTA GATTAATAAA GTATATTTTC
CATATTTTCT GTTTTTCAAT CTTTGCATTG TTACTTTCAC AGCTCGTTAT ATTCAGCGGT
TCCTACCTCG AAAATCTTGT TGCATCAGTT GGACTCGATC CGCTCACTTT CGTGGGAGGC
TTGATATATC AAACCTTGCT TGGGATCTTG GGCGCCGTTG GCATAAACGG ACACAACATG
CTGTTTGTTA TCAAACAGCA AATCTATGCC GATACGCTAA CGAATATTGA GGCCTGGCGC
GCCGGAGAAG CTTCAATCAA TATTATTAGC CAAGGCTTCT ATGACGCATT TCTGTCTATG
GGGGGCTCGG GTAACTGCAT AAGCCTGTTG CTGTGTGTGC TTATTTTTAG CCGAAATTAT
AACCACAGTA TGCTGGCAAT TGTCGCAATA CCTATGGTCA TATTTAATAT CAATGAAGTG
TTATTATTTG GCCTGCCGAT CCTGTTTAAT CCGGTTATGA TCATCCCGTT TATCTTGGTG
CCACTGGCCA GCTTCGTAAT CGTTTATGCC TGTATTGCGC TAGGTGTCGT ATCACCGGTA
GTGAGTATCG TGAACTGGCT GACGCCGCCC ATTTTCAGTG GTTACTTCGC GATGGGAGAG
CAGCTGGATG GGGCGCTTTT GCAAATTGTA GTCATTACTG TTGGCGTGTT TATCTATCGG
CCTTTCTATC TTGCGTATGT TGGTAAGCAC TTGGTGTCGC TTGCTCCCAA TACTCGATAC
GCCGCGGCCG AAAGTTCGAT TTTTAATCAT GTGCTACGAA GTGTAAGAAA TTCGACCAAT
GATAATTTTA CCCAATCATC GGCTCAAAAA AGGATGGCGC AGATTTTAAG ACACGGAAAT
CTGGTCATGT TTTACCAAAA AATTCAGTCA ATAAAGAATA AAGAGCAATA CAGTTATGAA
GCACTGCTTC GCTATGTTGA TGATAAGGGA AAGTTATGCT CGCCAGAATT TATTCTAGAT
TTCCAACTGC TTGAAGCTAT GCCAATGCTG GATAAGTTGG TAATTGAGCT AGTATTAAGT
GATATGCAGA AAATGAATTT GCCTCTAGGA GGACGTGTTG CCATTAACAT ATCTGTGGCG
TCCATCGAGC AAGCGGATTT CGTCGAGCAC TTACTGACAC GGCTTGAGCA TTATTGTATT
TCTCCGTCAA AGGTAGAAAT TGAAATAACA GAAGAAGCCA TGCTCAATGA CAAAGTCTAC
TTAACTCAGG TAATGAAAGA CCTTCAGCAA AAAAATATTG CCATCTCTAT GGATGATTTT
GGCTCTGGCT ACGCCTCATT TCCACATTTG CTGCAGTATC CATTTGATAA AGTCAAAATA
GACAGATCAT TGTTGTTAGA TGCGCAATCG ATCAAAGGCA GAGAAATCTA TAAATTGGTG
GCTAAGTTAG GCGAAATCGC TAATTGTAAA ATCGTTGCCG AGGGTGTAGA AACAAAGCAA
GAGTATGAAT TTGTAGAAAA TTGTGGCGTC GACTTTGTTC AAGGTTATTA CTTAGCGAGG
CCTTTACCGC TTGCAAGCCT GTCCAGTGAA AATGTGGCTG ACAGGTTAAT ATCTTAG
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| Protein sequence | MTLRYISSRV LNWSKESKLY LSDLAAIALL LLPITLASSL AMLLGHAFRV LEIANVSELL
FYVSDILINL YPTTFCVVAS YYLSQKTNAS SAIFIIYALV LFYILSIGNQ DFLTSHTLPN
NPLLALLSAI VTYLYYFYFP VRLLDPNSFD FASRLIKYIF HIFCFSIFAL LLSQLVIFSG
SYLENLVASV GLDPLTFVGG LIYQTLLGIL GAVGINGHNM LFVIKQQIYA DTLTNIEAWR
AGEASINIIS QGFYDAFLSM GGSGNCISLL LCVLIFSRNY NHSMLAIVAI PMVIFNINEV
LLFGLPILFN PVMIIPFILV PLASFVIVYA CIALGVVSPV VSIVNWLTPP IFSGYFAMGE
QLDGALLQIV VITVGVFIYR PFYLAYVGKH LVSLAPNTRY AAAESSIFNH VLRSVRNSTN
DNFTQSSAQK RMAQILRHGN LVMFYQKIQS IKNKEQYSYE ALLRYVDDKG KLCSPEFILD
FQLLEAMPML DKLVIELVLS DMQKMNLPLG GRVAINISVA SIEQADFVEH LLTRLEHYCI
SPSKVEIEIT EEAMLNDKVY LTQVMKDLQQ KNIAISMDDF GSGYASFPHL LQYPFDKVKI
DRSLLLDAQS IKGREIYKLV AKLGEIANCK IVAEGVETKQ EYEFVENCGV DFVQGYYLAR
PLPLASLSSE NVADRLIS
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