| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_4179 |
|---|
| Symbol | |
|---|
| ID | 5605336 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 4632461 |
|---|
| End bp | 4634575 |
|---|
| Gene Length | 2115 bp |
|---|
| Protein Length | 704 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640939739 |
|---|
| Product | putative plasmid transfer protein |
|---|
| Protein accession | YP_001480401 |
|---|
| Protein GI | 157372412 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATC GCCACGTGAT GGAAGCATTG CTGCGTCCAG CAGTCGAGTT GAATACAGCG
ATTGTGGCCG GTGCCGCAGC CGCTATTTGT TTTGTTGCCC CTTGGTCAGT GGCCTTGGCA
CCGTCGGTGA GTTATGTCAC TGCCAGCGGG TTTGCGGTGT TATCTGCTAT ACGAGCCCGT
CAGGGCATGC AGGTGATCCG CTATCGCCGT AATCTGCGCC GGCTGCCGCG CTACGTCATG
ACCAGCGCAC AGATCCCGGT TAGCCGGCAG CGGTTGTTCC TGGGGCGGGG TTTTCGCTGG
CAGCAAAAGC ACACCCAGCG CCTGATGGAT ACCCGTCGTC CAGAGGTTGA GAAGTATGTT
CAGCCGCCAA AAATGTATCA GATGGCGCGT CGCCTGGAGC TTAAAACCGA ATACACCCTG
CCGTGGTTAT CCCAGTTGCT GCGCACCGAC TCCCTGCTGA ATCCGGTCAG GCCGTTGCCG
CCGGTCGGTG GGAACCCGGC GATTCATGGT ATTGAACCCG ATGAACTGGA TGTTTCGATG
GATTTGCGTG AACGCGTGGG CCACAGTCTG GTACTGGGTA CTACGCGTGT TGGCAAAACG
CGTCTCGCCG AGTTGCTGAT CACCCAGGAT ATTCGGCGTG GTGACATCAC CATCGTGTTT
GATCCGAAAG GCGATGCAGA CCTGCTGCGG CGTGTCTGGG CCGAAGCCCA CCGTGCCGGC
CGCGGGGATG AGCTGTTCAT CTTTCATCTG GGTTGGCCAG ATATCTCGGC ACGCTATAAC
GCCGTCGGGC GTTTTGAGCG TGTGTCGGAA GTGGCCGGGC GTATCTCCGG GCAGTTGAGT
GGGGAGGGCA ACAGTGCGGC ATTCCGCGAG TTTGCCTGGC GATTCGTCAA CATCGTCGCG
CGTGCCCTGG TTGCGTTGGG GCAGCGCCCG GACTACACCC TGATCACCCG GTATGTGAAC
AACATCAGTG AACTGTATGA GACCTACGCG AAGAAGGTGA TTGAAACGCG TATGCCGGCA
CTGCAGCAGC AAATCGACAA TAACCTGCAG GTGCTGACGG AAGAGGATGT GCCGCGCAAT
ATGCAGGGAC AACCGAACGC GGTCAAAATA TTTGCAGTCG AAATGGCCCT GAGCTCGGAA
GCCGGCAAGC AGCTGTATGA TCCTATCCTG GATGGACTGC GCTCGGCCGT GCGCTATGAC
CGCACCTATT TTGATAAAAT TGTGGCGTCA CTGCTGCCGT TGCTGGAAAA ACTCACCACC
GGCAAGACCG CAGAGCTGCT GGCGCCGAAC TACATGGACA TGAATGACCC CCGGCCGATA
TTTGACTGGG AACAGGTCAT CCGCAAGCGC GGTATTGTTT ACGTCGGGCT GGATGCGTTG
TCGGACGGAG TGGTTGCCTC TGCCGTCGGC AACAGTATGT TTGCTGACCT GGTGTCTGTG
GCCGGCCATA TCTATAAACA CGGCATGCAT GGCGGGTTGC CGACCCGCGC AGACGGCAAA
CTGCCGATCA ACCTGCACTG TGACGAGTTC AATGAGTTGA TGGGGGACGA ATTTATCCCT
CTCATCAACA AAGGCGGTGG CGCCGGCATG CAGGTGACGG CTTACACGCA AACCGAGTCG
GACATTGAGG CGCGCATCGG CAGTACCGCC AAGGCGGCCC AGGTGACGGG TAACTTCAAT
ACTCTGATCA TGCTGCGCGT GCGAGAGAAC CGAACCGCAC AGCTACTGAC GACACAGCTC
CCGGAGGTCG ATGTCTACAC CAAAACCCTG GTGTCGGGGC ACGCTGATAC GGCCGACATC
GAGAAAGGGC AGGACTTCAC GTCCAGTACT CAGGATCGCG TCGGTACGGT AAAAACGCCG
CTGTTGATGC CGGCGGATGT GATTAATCTG CCGAAGGGGC AGGCGTTCGC GCTGCTGGAA
GGTGGGCAAT TATGGAAAAT CAGGATGCCT TTACCGAGTG GCGACGGCGA TGATGCGTTG
ATGCCACCCA ACCTGCAGAA GATTGCCGAG GAGATGCAAC GCAATTACCG GACCAGTGAA
TCCTGGTGGT CAGCCAGCAC AGTCATGCCA GATGCGGTCA TAAAAGGGGG GCTGAATGTC
ACAAACGGTG AATAA
|
|---|
| Protein sequence | MSNRHVMEAL LRPAVELNTA IVAGAAAAIC FVAPWSVALA PSVSYVTASG FAVLSAIRAR
QGMQVIRYRR NLRRLPRYVM TSAQIPVSRQ RLFLGRGFRW QQKHTQRLMD TRRPEVEKYV
QPPKMYQMAR RLELKTEYTL PWLSQLLRTD SLLNPVRPLP PVGGNPAIHG IEPDELDVSM
DLRERVGHSL VLGTTRVGKT RLAELLITQD IRRGDITIVF DPKGDADLLR RVWAEAHRAG
RGDELFIFHL GWPDISARYN AVGRFERVSE VAGRISGQLS GEGNSAAFRE FAWRFVNIVA
RALVALGQRP DYTLITRYVN NISELYETYA KKVIETRMPA LQQQIDNNLQ VLTEEDVPRN
MQGQPNAVKI FAVEMALSSE AGKQLYDPIL DGLRSAVRYD RTYFDKIVAS LLPLLEKLTT
GKTAELLAPN YMDMNDPRPI FDWEQVIRKR GIVYVGLDAL SDGVVASAVG NSMFADLVSV
AGHIYKHGMH GGLPTRADGK LPINLHCDEF NELMGDEFIP LINKGGGAGM QVTAYTQTES
DIEARIGSTA KAAQVTGNFN TLIMLRVREN RTAQLLTTQL PEVDVYTKTL VSGHADTADI
EKGQDFTSST QDRVGTVKTP LLMPADVINL PKGQAFALLE GGQLWKIRMP LPSGDGDDAL
MPPNLQKIAE EMQRNYRTSE SWWSASTVMP DAVIKGGLNV TNGE
|
|---|
| |