| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_4029 |
|---|
| Symbol | |
|---|
| ID | 5605522 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 4470708 |
|---|
| End bp | 4471730 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640939589 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_001480252 |
|---|
| Protein GI | 157372263 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.364781 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00141346 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCG ATGAATTCGT GGCCCTTAGT GTAAAGCATA ATGCTTCCGA TCTGCACCTT
TGTACCGGTC ATCGGCCGAT GTTGCGCATT GATGGTGAAC TTCAGCCGCT GGAAGGGGCG
GAAATACTGA GCGAAGCCAG AATGCAACTG CTGTGCAACG GCGTGCTGCA GCCGTTACAA
CGACAGCAGT TACAACAACA AGGGCAGTTG GATCTGGCGC TTTCGCTGCC GGGTGATATC
CGGTTGCGCG CCAATTTTTT TCTGCAAAAC CTGGGCGTCT CCGTTGCATT GCGGCTGATA
GCGGGCCAAT GTCCGACTCT GGCAGCATTG GCGGCGCCAG ATATTATCCC TGCGTTGGTG
CGACGTGAAG ACGGCCTGAT CCTGGTGACC GGCGCGACCG GCAGCGGTAA ATCCACCACC
TTGGCGGCGA TGATTGACGA CATCAATCAG CACCAGCGGC GGCATATCCT CACGTTGGAA
GATCCGATTG AGTTTATCCA CCGCAGCAGG CAGTGTTTGA TTCAGCAGCG GGAGTTGGGG
CGCGACAGCC ACAGTTTTGA CGACGCATTG CGTGCCGCAC TGCGTGAAGA TCCGGATGTG
ATCCTGTTGG GGGAGTTGCG CGATACCGCC ACCATCCGCC TTGCTCTGAC CGCTGCAGAA
ACCGGCCACC TGGTACTGGC CACGCTGCAT ACCCGCAGTG CGCCGCAGGC GGTGGATCGG
CTGGTGGATG TTTTTCCGGC GGAAGAAAAG CCCTATGTAC GCGCCCAACT GGCCGGGAGC
CTGCAGGCGG TGATTGCACA AAAGCTGTTA AGTCGGCCCG GAGGCGGCAG GGTGGCGATT
TTTGAGGTGC TGACGGCAAC GGCGGCGGTC AGCAGCATGA TCCGTGAAGG CAAAACCCAC
CAGTTGGCCA ACGTGCTGCA AACCGGCGGG CAGTCCGGCA TGCAGACCTT TGAACAGGGC
CTGCAGCAGC GGATCAGCAC CGGCTTACTT GGTGGAGGGC AAGACACTCA GAATAGGGAT
TAA
|
|---|
| Protein sequence | MDIDEFVALS VKHNASDLHL CTGHRPMLRI DGELQPLEGA EILSEARMQL LCNGVLQPLQ
RQQLQQQGQL DLALSLPGDI RLRANFFLQN LGVSVALRLI AGQCPTLAAL AAPDIIPALV
RREDGLILVT GATGSGKSTT LAAMIDDINQ HQRRHILTLE DPIEFIHRSR QCLIQQRELG
RDSHSFDDAL RAALREDPDV ILLGELRDTA TIRLALTAAE TGHLVLATLH TRSAPQAVDR
LVDVFPAEEK PYVRAQLAGS LQAVIAQKLL SRPGGGRVAI FEVLTATAAV SSMIREGKTH
QLANVLQTGG QSGMQTFEQG LQQRISTGLL GGGQDTQNRD
|
|---|
| |